SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54798

Length: 256 nt

UniGene Fasta

>sp_v1.1_unigene54798
ACTTGCAAAAAGAAATGCAGATAACAGGCTTTTAATTGCAGAGGCAGGAGCTATTCCACAGTTAGTGAAATTGTTATCTTCAACTGACATGAAGACCCAGGAGCATGCAGTCACTGCCCTTTTAAATTTATCTATTCACAGCAGCAATAAGGGATTTATTGTTCAAGCAGGTGCTATCAATCGTATAATAGATGTCCTGAAGCATGGTAGCATGGAAGCAAGAGAAAATGCAGCTGCGACCCTTTTCAGCTTGTCT

Ace file of the UniGene sp_v1.1_unigene54798

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PUB14; PUB14; ubiquitin-protein ligase	-	-	2.0e-27	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	protein	-	-	1.74442e-37	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	1.74442e-37	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	1.74442e-37	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo	IPR000225	-	1.74442e-37	87%
Blast2go	Armadillo-like helical	IPR011989	-	1.74442e-37	87%
Blast2go	Armadillo-type fold	IPR016024	-	1.74442e-37	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: Distance to subject end: 171 aas, your sequence is shorter than subject: 85 - 497

Fln protein: LAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSMEARENAAATLFSLS

Protein Length: 86

Fln nts: ACTTGCAAAAAGAAATGCAGATAACAGGCTTTTAATTGCAGAGGCAGGAGCTATTCCACAGTTAGTGAAATTGTTATCTTCAACTGACATGAAGACCCAGGAGCATGCAGTCACTGCCCTTTTAAATTTATCTATTCACAGCAGCAATAAGGGATTTATTGTTCAAGCAGGTGCTATCAATCGTATAATAGATGTCCTGAAGCATGGTAGCATGGAAGCAAGAGAAAATGCAGCTGCGACCCTTTTCAGCTTGTCT

Fln Alignment:

sp_v1.1_unigene54798___LAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSMEARENAAATLFSLS
C0PSB5_______________LAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSTEARENAAATLFSLS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain