SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54781

Length: 495 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene54781
GGCGCTTGGTCGTCATATTGACCACCATCATGTCCAGTCCAGCGGAACAACAGCCTCTTCTGGCGTACCCCTACTTTGAGGGACACGCCCACCCTGAGCAGCCCAAAAGGACCCTCACAGTCTGGCGCGAGAACGTTGCTCGCGTTTTAGAGTCCCAGGCCTTTCACACCTTCGTCATTGCATTGATCGTAATCGATGCCACTTGCGTCCTCGCTGACCTTGGATATACCGTTTTGTCCGACTCATGCACTCCATCGGACGAAGGCCCCGCATGGCTCGAAGTTCTAGCAAACATATCACTCGTCATCACCACGCTCTTTCTTATTGAAATACCAATCACTCTCTGGGCTTCTGGATTCCGCTTCTATATCCCATTCTCGGGCGTGCCCCATGCGGCGCTACATCTCTTTGATGTTGCGATCATCGTCACGACTTTCATTCTCGAATTCGTCCTCAAGGGACGCCAACGTGAATTGGCTGGACTTCTCATCACTC

Ace file of the UniGene sp_v1.1_unigene54781

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HVCN1; hydrogen voltage-gated channel 1	-	-	3.0e-06	29%
FL-Next	tr=Putative uncharacterized protein; Chlorella variabilis.	-	-	0.0	37%
Blast2go	predicted protein [Laccaria bicolor S238N-H82]	-	-	1.30784e-37	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: E1ZKX0

Fln msg: Distance to subject end: 204 aas, your sequence is shorter than subject: 164 - 480

Fln protein: RLVVILTTIMSSPAEQQPLLAYPYFEGHAHPEQPKRTLTVWRENVARVLESQAFHTFVIALIVIDATCVLADLGYTVLSDSCTPSDEGPAWLEVLANISLVITTLFLIEIPITLWASGFRFYIPFSGVPHAALHLFDVAIIVTTFILEFVLKGRQRELAGLLIT

Protein Length: 165

Fln nts: GGCGCTTGGTCGTCATATTGACCACCATCATGTCCAGTCCAGCGGAACAACAGCCTCTTCTGGCGTACCCCTACTTTGAGGGACACGCCCACCCTGAGCAGCCCAAAAGGACCCTCACAGTCTGGCGCGAGAACGTTGCTCGCGTTTTAGAGTCCCAGGCCTTTCACACCTTCGTCATTGCATTGATCGTAATCGATGCCACTTGCGTCCTCGCTGACCTTGGATATACCGTTTTGTCCGACTCATGCACTCCATCGGACGAAGGCCCCGCATGGCTCGAAGTTCTAGCAAACATATCACTCGTCATCACCACGCTCTTTCTTATTGAAATACCAATCACTCTCTGGGCTTCTGGATTCCGCTTCTATATCCCATTCTCGGGCGTGCCCCATGCGGCGCTACATCTCTTTGATGTTGCGATCATCGTCACGACTTTCATTCTCGAATTCGTCCTCAAGGGACGCCAACGTGAATTGGCTGGACTTCTCATCACTC

Fln Alignment:

sp_v1.1_unigene54781___VARVLESQAFHTFVIALIVIDATCVLADLGYTVLSDSCTPSDEGPAWL-----EVLANISLVITTLFLIEIPITLWASGFRFYIPFSGVPHAALHLFDVAIIVTTFILEFVLKGRQRELAGLLI
E1ZKX0_______________MAEVLESREAHYAVIGLVLLDLAIVLTEL---VLS-SFYPSPELAPHLVHVAEEALSYTSIGILAMFNAELLAKLLVFGFKYFT------HSSWHMFDAVIVVISFTLELSLRGVAQEVASLLI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain