SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54705

Length: 286 nt

UniGene Fasta

>sp_v1.1_unigene54705
ACCTTCCGACTTGAGATGCGTTGAATCTTTCAGAGCACACGACGATGCCATCAATGCCCTTGTGGTTTCGGCAGATGGTTTTGTTTACACAGGATCTGCTGATTCTAGAATCAAAATCTGGGCGAAGGCCTTTGGTGAGAGAAAACATTCTCTGGTTGCCATAATTGAAAGACACAAATCTGCTATCAATGCACTGGCTCTCAGCCCCAGTGGCTCCATCCTCTACTCTGGAGCTTGTGATCGATCCATCATTGTTTGGGAAAGGGAGGAAAGCGAGAGGCACATC

Ace file of the UniGene sp_v1.1_unigene54705

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box and wd40 domain protein, putative (EC:2.7.11.7)	-	-	1.0e-31	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	26%
Blast2go	f-box and wd40 domain	-	-	2.20892e-32	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.20892e-32	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	WD40 repeat	IPR001680	-	2.20892e-32	81%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	2.20892e-32	81%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	2.20892e-32	81%
Blast2go	WD40-repeat-containing domain	IPR017986	-	2.20892e-32	81%
Blast2go	WD40 repeat, subgroup	IPR019781	-	2.20892e-32	81%
Blast2go	WD40 repeat 2	IPR019782	-	2.20892e-32	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 95 - 314

Fln protein: PSDLRCVESFRAHDDAINALVVSADGFVYTGSADSRIKIWAKAFGERKHSLVAIIERHKSAINALALSPSGSILYSGACDRSIIVWEREESERHI

Protein Length: 96

Fln nts: ACCTTCCGACTTGAGATGCGTTGAATCTTTCAGAGCACACGACGATGCCATCAATGCCCTTGTGGTTTCGGCAGATGGTTTTGTTTACACAGGATCTGCTGATTCTAGAATCAAAATCTGGGCGAAGGCCTTTGGTGAGAGAAAACATTCTCTGGTTGCCATAATTGAAAGACACAAATCTGCTATCAATGCACTGGCTCTCAGCCCCAGTGGCTCCATCCTCTACTCTGGAGCTTGTGATCGATCCATCATTGTTTGGGAAAGGGAGGAAAGCGAGAGGCACATC

Fln Alignment:

sp_v1.1_unigene54705___RCVESFRAHDDAINALVVSADG-FVYTGSADSRIKIWAKAFGERKHSLVAIIERHKSAINALALSPSGSILYSGACDRSIIVW
A9NPC1_______________KCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATG---HCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain