SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54696

Length: 473 nt

UniGene Fasta

>sp_v1.1_unigene54696
GAAAGTTTCTCGGGCAATGGTCCTCGTCTTTGGATGCTTTATGGGAGTCCTAGCAGCGGCACTGAACAAGGCTGGCATTTCGCTTGGATGGATGTATTTAGCCACGGGAGTGCTGATTGGTTTCGCGGTAATGCCCATAGCTTTTCTGCTTCTGTGGAGGAAGGCGAATGCAGTAGGAGCCATAGCGGGGACAATTGTTGGATGTGTGGTAGGAATAATCACATGGCTCTCTGTGACAAAAGTGGAGTATGGGCGGGTTAACCTTGACACTACAGGAAAGAATGCGCCCATGCTTGCAGGAAACCTTGTATCAATACTAGCAGGGGGACTAATTCATGCTGCCTGTAGTCTTGTATGGCCCCAAAATTACGACTGGGAGACAACCAAGTCCATTGCCATGGTTGAGAAGGACAAAATAGACCTACCGACAGAGGAATTCGATGAGGAAAAGCTGAACAGAGCCAAAACCCCAT

Ace file of the UniGene sp_v1.1_unigene54696

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_33.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7U403_VITVI	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	74%
Blast2go	sodium:solute symporter family protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular response to nitrogen starvation	GO:0006995	Biological Process	0.0	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sodium/solute symporter	IPR001734	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7U403

Fln msg: Distance to subject end: 122 aas, your sequence is shorter than subject: 157 - 710

Fln protein: KVSRAMVLVFGCFMGVLAAALNKAGISLGWMYLATGVLIGFAVMPIAFLLLWRKANAVGAIAGTIVGCVVGIITWLSVTKVEYGRVNLDTTGKNAPMLAGNLVSILAGGLIHAACSLVWPQNYDWETTKSIAMVEKDKIDLPTEEFDEEKLNRAKTP

Protein Length: 158

Fln nts: GAAAGTTTCTCGGGCAATGGTCCTCGTCTTTGGATGCTTTATGGGAGTCCTAGCAGCGGCACTGAACAAGGCTGGCATTTCGCTTGGATGGATGTATTTAGCCACGGGAGTGCTGATTGGTTTCGCGGTAATGCCCATAGCTTTTCTGCTTCTGTGGAGGAAGGCGAATGCAGTAGGAGCCATAGCGGGGACAATTGTTGGATGTGTGGTAGGAATAATCACATGGCTCTCTGTGACAAAAGTGGAGTATGGGCGGGTTAACCTTGACACTACAGGAAAGAATGCGCCCATGCTTGCAGGAAACCTTGTATCAATACTAGCAGGGGGACTAATTCATGCTGCCTGTAGTCTTGTATGGCCCCAAAATTACGACTGGGAGACAACCAAGTCCATTGCCATGGTTGAGAAGGACAAAATAGACCTACCGACAGAGGAATTCGATGAGGAAAAGCTGAACAGAGCCAAAACCCCAT

Fln Alignment:

sp_v1.1_unigene54696___KVSRAMVLVFGCFMGVLAAALNKAGISLGWMYLATGVLIGFAVMPIAFLLLWRKANAVGAIAGTIVGCVVGIITWLSVTKVEYGRVNLDTTGKNAPMLAGNLVSILAGGLIHAACSLVWPQNYDWETTKSIAMVEKDKIDLPTEEFDEEKLNRAK
D7U403_______________QVSRMVVLGFGCFMGLLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAFGAILGTVTGCILGVITWLSVTSIEYGQVNLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYDWDTTRQITTVEKEKSELPAEEFREEKLIRAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain