SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54543

Length: 369 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene54543
GATGCAGAAGCACGTGCACTACTGTTGAAGGGGCTTGCAATTCCTGCGTATGACCATGTTCTCAAGACCTCTCATGCTTTCAACATTTTAGATGCTAGAGGTTCCATAGGTGTCACAGAAAGAGCCCGATTTTTGGCCGCATGCGTAGTTTGGCACGCAAATGTGCACAACTCTTGGTTAAAACTCGAGAATCACTAGGTCATCCACTGGGATTTGGGAAGAAGAGGAAGCCCTTTTCTACCCAGAAGAAGCTCTTGACAGAGTTGTGCAAAAGATAGATGTTGAAAGGACGTTTGTCTAGAAGTTGGAACTGAGGAGCTTCCATCACATGATGTAACGGAAGGAATTGAGCAGCTAGAGAAGGCAATT

Ace file of the UniGene sp_v1.1_unigene54543 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EDD1; EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1); glycine-tRNA ligase; K14164 glycyl-tRNA synthetase [EC:6.1.1.14]	-	-	5.0e-15	43%
FL-Next	Isoform 2 of Glycyl-tRNA synthetase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLYRS-2	-	-	0.0	43%
Blast2go	glycyl-trna synthetase	-	-	2.61723e-17	51%

Source	ECs	Term	Type	e value	Identity
AutoFact	Glycine--tRNA ligase.	EC:6.1.1.14	-	5.0e-15	43%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Aminoacyl-tRNA biosynthesis	00970		5.0e-15	43%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development	GO:0009790	Biological Process	2.61723e-17	51%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.61723e-17	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycyl-tRNA synthetase, class IIc, alpha subunit	IPR002310	-	2.61723e-17	51%
Blast2go	Glycyl-tRNA synthetase, class II, heterodimeric	IPR006194	-	2.61723e-17	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8L785-2

Fln msg: Distance to subject end: 655 aas, your sequence is shorter than subject: 123 - 1066

Fln protein: DAEARALLLKGLAIPAYDHVLKTSHAFNILDARGSIGVTERARFLAACVVWHANVHNSWLKLENH*VIHWDLGRRGSPFLPRRSS*QSCAKDRC*KDVCLEVGTEELPSHDVTEGIEQLEKAI

Protein Length: 124

Fln nts: GATGCAGAAGCACGTGCACTACTGTTGAAGGGGCTTGCAATTCCTGCGTATGACCATGTTCTCAAGACCTCTCATGCTTTCAACATTTTAGATGCTAGAGGTTCCATAGGTGTCACAGAAAGAGCCCGATTTTTGGCCGCATGCGTAGTTTGGCACGCAAATGTGCACAACTCTTGGTTAAAACTCGAGAATCACTAGGTCATCCACTGGGATTTGGGAAGAAGAGGAAGCCCTTTTCTACCCAGAAGAAGCTCTTGACAGAGTTGTGCAAAAGATAGATGTTGAAAGGACGTTTGTCTAGAAGTTGGAACTGAGGAGCTTCCATCACATGATGTAACGGAAGGAATTGAGCAGCTAGAGAAGGCAATT

Fln Alignment:

sp_v1.1_unigene54543___DAEARALLLKGLAIPAYDHVLKTSHAFNILDARGSIGVTERARFLAACVVWHANVHNSWLKLENH*VIHWDLGRRGSPFLP--RRSS*QSCAK--DRC*KDVCLEVGTEELPSHDVTEGIEQL
Q8L785-2_____________DEEARSLLALGLPIPAYDQLLKTSHAFNILDARGFIGVTERARYFGRMRSLARQCAQLWLATRES--LGHPLGVASEPVPPVCHRAALEKVAEKVSEDPRSFIIEIGTEEMPPQDVINASEQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain