SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54511

Length: 461 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene54511
CATCCAAACAGAGTGGCCTCCCTCAACCTCATTCTGATGGATCTGAGCGGTTCCATTTCTCCATCGCTCGGCAATTTGTCGTTTCTCCGCACGCTCGATCTTTCAGGGAATGCACTCACTGGTCATATCCCGCCTCAATTGGGACGCCTCTTTCGTTTGAGGGAGCTCGGGTTGGACAACAATGGCTTGGACGGAAATATCCCAACTCAACTCTGCAGTTGCAGAAATTTGACTGTTCTGGCGCTCTCCTTCAACAACCTGACCGGAATAATCCCGAGCGAGTTGGGTTCGCTTCCGCTTTTGCAAAAGCTTGACTTGGGAAAGAACGAGCTGACAGAGTATGGATTCGGTCAGCCAGTGTCTACCAAAGGAGATATTTACAGCTATGGCATTTTGTTATTGGAATGCTTACGAGGAAACGACCAACTAGTGATATGTTTTCTGGAGACTTGGACTTGCAC

Ace file of the UniGene sp_v1.1_unigene54511 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9SLE0_RICCO	-	-	1.0e-19	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	serine-threonine protein plant-	-	-	5.47888e-20	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	5.47888e-20	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	5.47888e-20	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 153 - 551

Fln protein: HPNRVASLNLILMDLSGSISPSLGNLSFLRTLDLSGNALTGHIPPQLGRLFRLRELGLDNNGLDGNIPTQLCSCRNLTVLALSFNNLTGIIPSELGSLPLLQKLDLGKNELTEYGFGQPVSTKGDIYSYGILLLECLRGNDQLVICFLETWTC

Protein Length: 154

Fln nts: CATCCAAACAGAGTGGCCTCCCTCAACCTCATTCTGATGGATCTGAGCGGTTCCATTTCTCCATCGCTCGGCAATTTGTCGTTTCTCCGCACGCTCGATCTTTCAGGGAATGCACTCACTGGTCATATCCCGCCTCAATTGGGACGCCTCTTTCGTTTGAGGGAGCTCGGGTTGGACAACAATGGCTTGGACGGAAATATCCCAACTCAACTCTGCAGTTGCAGAAATTTGACTGTTCTGGCGCTCTCCTTCAACAACCTGACCGGAATAATCCCGAGCGAGTTGGGTTCGCTTCCGCTTTTGCAAAAGCTTGACTTGGGAAAGAACGAGCTGACAGAGTATGGATTCGGTCAGCCAGTGTCTACCAAAGGAGATATTTACAGCTATGGCATTTTGTTATTGGAATGCTTACGAGGAAACGACCAACTAGTGATATGTTTTCTGGAGACTTGGACTTGCAC

Fln Alignment:

sp_v1.1_unigene54511___RVASLNLILMDLSGSISPSLGNLSFLRTLDLSGNALTGHIPPQXXXXXXXXXXXLDNNGLDGNIPTQLCSCRNLTVLALSFN-NLTGIIPSELGSLPLLQKLDLGKNELT---EYGFGQPVSTKGDIYSYGIL
B8LRW5_______________RVVSLNLTGMGLQGPISPLLANLSFLRVLDLSNNSHHGYIPHDLGRLFRLRVLRLSRNRLECPIPSTICGCRLLKIISLSNNFLLNGSIPSELGLLRNLKFLWLGINKLTGSIPASFGNMSSLKNFSLGYNQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain