SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54457

Length: 295 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene54457
TCCTGGAATACTATGATGGCGGGGCTATGCGAAATTCAGACGTTTGGATTTTGCGCGCGAACTGTTTGACGAAATGCCTGAGCGAGATGTAACGTCTTGGAATACAATTATCGCAGCGTATGAACAGCAAGGCTGCGGTGAAGAGGCTTCAAGGCTCTTTTGCCAATTGATATGTGCCGGTGTGCGGCCGAATCATTTTACTTTTGCCAGCGTTCTGAGCGCTTCTGCCGGGCTGTTAGATGTGGAACAGGGTAAGCAGCTTCATGCGTATATTATAAGAATTGGCTTTCTGTCC

Ace file of the UniGene sp_v1.1_unigene54457 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	6.0e-16	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	pentatricopeptide repeat-containing protein	-	-	2.86715e-16	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	2.86715e-16	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 339 aas, your sequence is shorter than subject: 98 - 795

Fln protein: PGIL*WRGYAKFRRLDFARELFDEMPERDVTSWNTIIAAYEQQGCGEEASRLFCQLICAGVRPNHFTFASVLSASAGLLDVEQGKQLHAYIIRIGFLS

Protein Length: 99

Fln nts: TCCTGGAATACTATGATGGCGGGGCTATGCGAAATTCAGACGTTTGGATTTTGCGCGCGAACTGTTTGACGAAATGCCTGAGCGAGATGTAACGTCTTGGAATACAATTATCGCAGCGTATGAACAGCAAGGCTGCGGTGAAGAGGCTTCAAGGCTCTTTTGCCAATTGATATGTGCCGGTGTGCGGCCGAATCATTTTACTTTTGCCAGCGTTCTGAGCGCTTCTGCCGGGCTGTTAGATGTGGAACAGGGTAAGCAGCTTCATGCGTATATTATAAGAATTGGCTTTCTGTCC

Fln Alignment:

sp_v1.1_unigene54457___YAKFRRLDFARELFDEMPERDVTSWNTIIAAYEQQGCGEEASRLFCQLICAGVRPNHFTFASVLSASAGLLDVEQGKQLHAYIIRIGFLS
B8LQA8_______________YTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain