SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54391

Length: 431 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene54391
ATGGGGATCTCTTCGACCATCTGAAGCCCTCCCATTTCTGTTTCTATTTTTCGTTTGGCAATGGCTGCTTCCACTTCTGCTCATTCAAACAACAATTACACGATGTATGACGTGTTTATCAACCATAGAGGTCCAGATGTGAAGAAGAACTTCGCCAGTCATCTGTACAGCCGGCTCGTTTCCTATGGACTGCGAACTTTTCAGAACGGGGAAATGATATAGATGGTCAAATTCATTGCACTATTAGAACCGCCTCTGTCCATGTTGCAATTTTTTCCCCCGGATATGCGCAGTCAAGGTTGTGTTTAGATGAGCTGGTGGTCATGTTGGAGTCAGGGGCTCCAATCATTGGAGTGTTTACCACGTAAAGCCCATTGATCTTAGATGTATAGTAGAGGGCAAAGGATGCTATGCTCAATCTCTACTCCAAC

Ace file of the UniGene sp_v1.1_unigene54391

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	4.0e-17	55%
FL-Next	tr=Putative TIR-NBS-LRR protein; Pinus monticola (Western white pine) (Strobus monticola).	-	-	0.0	77%
Blast2go	tir nbs lrr disease resistance protein	-	-	2.25899e-24	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: E9NZS6

Fln msg: Separated hits, possible frame ERROR between 201 and 204, Unexpected STOP codon at 3' end. Distance to subject end: 1360 aas, your sequence is shorter than subject: 103 - 1490

Fln protein: MAASTSAHSNNNYTMYDVFINHRGPDVKKNFASHLYSRLVSYGLRTxxERGNDIDGQIHCTIRTASVHVAIFSPGYAQSRLCLDELVVMLESGAPIIGVFTT*

Protein Length: 104

Fln nts: ATGGGGATCTCTTCGACCATCTGAAGCCCTCCCATTTCTGTTTCTATTTTTCGTTTGGCA_-_ATGGCTGCTTCCACTTCTGCTCATTCAAACAACAATTACACGATGTATGACGTGTTTATCAACCATAGAGGTCCAGATGTGAAGAAGAACTTCGCCAGTCATCTGTACAGCCGGCTCGTTTCCTATGGACTGCGAACTTTxxxAGAACGGGGAAATGATATAGATGGTCAAATTCATTGCACTATTAGAACCGCCTCTGTCCATGTTGCAATTTTTTCCCCCGGATATGCGCAGTCAAGGTTGTGTTTAGATGAGCTGGTGGTCATGTTGGAGTCAGGGGCTCCAATCATTGGAGTGTTTACCACGTAAAGCCCATTGATCTTAGATGTATAGTAGAGGGCAAAGGATGCTATGCTCAATCTCTACTCCAAC

Fln Alignment:

sp_v1.1_unigene54391___MAASTS--AHSNNNYTMYDVFINHRGPDVKKNFASHLYSRLVSYGLRTFxERGNDIDGQIHCTIRTASVHVAIFSPGYAQSRLCLDELVVMLESGAPIIGVF
E9NZS6_______________MAASTSNAAHSNNN-SCYDVFISHRGPDVKKTFASHLYRRLFSFGLRVFxQKGEDFNCEIKGAIETASVHIAIFSPTYADSPWCLDELVFMLETTAPIIPVF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain