SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54346

Length: 473 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene54346
ATTGGGGTATTCCCATCTGCTTCTATTTCTCAGAAAATCTCTGTGCATGATTGAGTTTTGATTGATTGATTGTATCGTCACTTACCTATAATTTCTGGAGGGTCAGTCACTGCTGTTGATATGCCTTTCATGATTGGATTGCATTGTATGGTTTGGAATTCTCACCCGAATCAATAGCCTTACTGGACCGCTGAATATGGGTATGTCTTTCTGCTGCAGGAAATGGGTGCCCTGGGATTTTTGGTGGTGGGTTTGTTGTTAGTAACTACAAGAGCTACAATGGCTTCAAGCTGGATAAGTGCGCATGCAACTTTTTATGGCGGAAGTGATGCCTCTGGCACAATGAGTGGAGCTTGTGGGTATGGAAATCTATACAGCCAAGGCTATGGCGCCAACACAGCAGCTCTGAGCACGGCCCTTTTCAACGATGGCCTCAGCTGTGGAGCCTGCTTTCAAGTCATGTGTAATGACGA

Ace file of the UniGene sp_v1.1_unigene54346

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Expansin (Fragment) n=2 Tax=Pinaceae RepID=P93495_PINTA	-	-	3.0e-26	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	alpha-expansin 4	-	-	6.12478e-27	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall organization	GO:0009664	Biological Process	6.12478e-27	90%
Blast2go	syncytium formation	GO:0006949	Biological Process	6.12478e-27	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Expansin/pollen allergen, DPBB domain	IPR007112	-	6.12478e-27	90%
Blast2go	Expansin/Lol pI	IPR007118	-	6.12478e-27	90%
Blast2go	Barwin-related endoglucanase	IPR009009	-	6.12478e-27	90%
Blast2go	Barwin-like endoglucanase	IPR014733	-	6.12478e-27	90%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRW4

Fln msg: Distance to subject end: 163 aas, your sequence is shorter than subject: 83 - 246

Fln protein: MGALGFLVVGLLLVTTRATMASSWISAHATFYGGSDASGTMSGACGYGNLYSQGYGANTAALSTALFNDGLSCGACFQVMCND

Protein Length: 84

Fln nts: ATTGGGGTATTCCCATCTGCTTCTATTTCTCAGAAAATCTCTGTGCATGATTGAGTTTTGATTGATTGATTGTATCGTCACTTACCTATAATTTCTGGAGGGTCAGTCACTGCTGTTGATATGCCTTTCATGATTGGATTGCATTGTATGGTTTGGAATTCTCACCCGAATCAATAGCCTTACTGGACCGCTGAATATGGGTATGTCTTTCTGCTGCAGGAA_-_ATGGGTGCCCTGGGATTTTTGGTGGTGGGTTTGTTGTTAGTAACTACAAGAGCTACAATGGCTTCAAGCTGGATAAGTGCGCATGCAACTTTTTATGGCGGAAGTGATGCCTCTGGCACAATGAGTGGAGCTTGTGGGTATGGAAATCTATACAGCCAAGGCTATGGCGCCAACACAGCAGCTCTGAGCACGGCCCTTTTCAACGATGGCCTCAGCTGTGGAGCCTGCTTTCAAGTCATGTGTAATGACGA

Fln Alignment:

sp_v1.1_unigene54346___RATMASSWISAHATFYGGSDASGTMSGACGYGNLYSQGYGANTAALSTALFNDGLSCGACFQVMCND
B8LRW4_______________RAVHCSGWISAHATFYGGSDATGTMGGACGYGNLYSQGYGTNTAALSTALFNNGFSCGACYEIQCND

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain