SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54328

Length: 370 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene54328
GAAACTCAAGCATGTGAATCAACCTCTTCTACGGGTGAAGCAAACTCACCGCCCGCACAATCTCCTTACCAATCACTTTGAAGAATTAAAAGCAGGGAGACAACATTCAATTGTAGATGAAGCTAACTTTGTAGAGCTTCCTCCGGAATTGTGCTTAGATTTAGGGGTTTCAAGCTCTGTAATTAGATCACTATATTTAATTCCTTCAGTGATGCACCGTTTGAACNCTTTAGCTCTGGGCTGGTCAACTCCGCAAAGCTATTAGGGAAGAACGTCCTACATGTCCACCAATACCTGCTGCACTGATCATGGAAGCACTGACTACATCGAGATGCTTTGAGTGCTTTTCATATGAACGGCTGGAATTATT

Ace file of the UniGene sp_v1.1_unigene54328 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dicer-like protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IKF4_POPTR	-	-	1.0e-16	45%
FL-Next	sp=Endoribonuclease Dicer homolog 3b; Oryza sativa subsp. japonica (Rice).	-	-	0.0	41%
Blast2go	dicer-like protein	-	-	2.26041e-16	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7XD96

Fln msg: Separated hits, possible frame ERROR between 238 and 240, Distance to subject end: 567 aas, your sequence is shorter than subject: 123 - 1637

Fln protein: KLKHVNQPLLRVKQTHRPHNLLTNHFEELKAGRQHSIVDEANFVELPPELCLDLGVSSSVIRSLYLIPSVMHRLNSLAxxAGQLRKAIREERPTCPPIPAALIMEALTTSRCFECFSYERLEL

Protein Length: 124

Fln nts: GAAACTCAAGCATGTGAATCAACCTCTTCTACGGGTGAAGCAAACTCACCGCCCGCACAATCTCCTTACCAATCACTTTGAAGAATTAAAAGCAGGGAGACAACATTCAATTGTAGATGAAGCTAACTTTGTAGAGCTTCCTCCGGAATTGTGCTTAGATTTAGGGGTTTCAAGCTCTGTAATTAGATCACTATATTTAATTCCTTCAGTGATGCACCGTTTGAACtCTTTAGCTCTxxxGGCTGGTCAACTCCGCAAAGCTATTAGGGAAGAACGTCCTACATGTCCACCAATACCTGCTGCACTGATCATGGAAGCACTGACTACATCGAGATGCTTTGAGTGCTTTTCATATGAACGGCTGGAATTATT

Fln Alignment:

sp_v1.1_unigene54328___LKHVNQPLLRVKQTHRPHNLLTNHFEEL--KAGRQHSIVDEANFVELPPELCLDLGVSSSVIRSLYLIPSVMHRLNSLALxAGQLRKAIREERPTCPPIPAALIMEALTTSRCFECFSYERLEL
Q7XD96_______________IQHPEQPLLLLKQSHNAHNLLFSKLKYLDGSTGKPLLMEKEQIHARVPPELLIHLDVTTDILKSFYLLPSVIHRLQSLMLxASQLRREIGYNQH----IPVTLILEAITTLRCCETFSLERLEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain