SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54258

Length: 430 nt

UniGene Fasta

>sp_v1.1_unigene54258
ATGGGGAACTCAAATCATATTTGGTCATTCCCCACTGACCCATTTCGCCATATATGTTATAATAGGCAGTAATTTTTGGTCTACAAGCTCTCTCAAAGCTTGCACCCAGGATTAGGAGTCCGCCATGGAATCCGATGGCTCAAAAGATAATTTTCGAACGGGCACAATTTGGACAGCAGTGGCTCATATCATCACAAGCCTCATAGGGGCAGGAGTGTTATCCCTGGCATGGAGTGTTGCCCAACTGGGATGGATTGCAGGGCCTGTGGCTATGGTTGTCTTTGCTCTTGTCACGTTGTATTCCACTTTCTTGCTCTCAGATTGTTACAGGTTCCCAGATCCAGTGTCTGGGCCTCACAGAAACACTTCTTACAGGGATGCAGTTCGAGCTAATTTGGTGCAAGAAGAGCATGGCTATGTGGACTAGTTC

Ace file of the UniGene sp_v1.1_unigene54258

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amino acid permease n=1 Tax=Populus trichocarpa RepID=A9PGQ9_POPTR	-	-	5.0e-28	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	amino acid permease	-	-	1.44202e-34	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	1.44202e-34	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid transporter, transmembrane	IPR013057	-	1.44202e-34	82%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV44

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 349 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 101 - 465

Fln protein: MESDGSKDNFRTGTIWTAVAHIITSLIGAGVLSLAWSVAQLGWIAGPVAMVVFALVTLYSTFLLSDCYRFPDPVSGPHRNTSYRDAVRANLVQEEHGYVD*

Protein Length: 102

Fln nts: ATGGGGAACTCAAATCATATTTGGTCATTCCCCACTGACCCATTTCGCCATATATGTTATAATAGGCAGTAATTTTTGGTCTACAAGCTCTCTCAAAGCTTGCACCCAGGATTAGGAGTCCGCC_-_ATGGAATCCGATGGCTCAAAAGATAATTTTCGAACGGGCACAATTTGGACAGCAGTGGCTCATATCATCACAAGCCTCATAGGGGCAGGAGTGTTATCCCTGGCATGGAGTGTTGCCCAACTGGGATGGATTGCAGGGCCTGTGGCTATGGTTGTCTTTGCTCTTGTCACGTTGTATTCCACTTTCTTGCTCTCAGATTGTTACAGGTTCCCAGATCCAGTGTCTGGGCCTCACAGAAACACTTCTTACAGGGATGCAGTTCGAGCTAATTTGGTGCAAGAAGAGCATGGCTATGTGGACTAGTTC

Fln Alignment:

sp_v1.1_unigene54258___AMESDGSKDNFRTGTIWTAVAHIITSLIGAGVLSLAWSVAQLGWIAGPVAMVVFALVTLYSTFLLSDCYRFPDPVSGPHRNTSYRDAVRANL
A9NV44_______________ACELDDTVEISRTGTVWTEVAHLITSVIGAGVLSLSWSVAQLGWIAGPAAMIVFALVSLYTTFLLVDCYRFPDPVSGPMRNTSYRKTVRVNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain