SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54211

Length: 745 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene54211

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	pentatricopeptide repeat-containing protein	-	-	74%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Separated hits, possible frame ERROR between 271 and 274, Distance to subject end: 56 aas, atg_distance in limit (1-15): atg_distance = 9, your sequence is shorter than subject: 245 - 312

Fln protein: MIVGYGLHGYSEDALLLFTQMRETDKRPNEITFIGVLAACSHAGRLDEGRQYFDCMTRDYCITPSTKHYACMVDLHGRAGQLEDAYxxIKRMPLEPDAGVWGALLGACRIHCNIELAEHVAEHLFALEPENAGYYVLLSNIYAAAGRWDNVIKIRVLMRGRRVKKPPGYSFIEMNGHIHAFIVGDRSHPQSEEIYAMLESLAEQMKDAGYVANKSCVLQEVADEVKEHILCSHSEKLAIAFGLIN

Protein Length: 246

Fln nts: ATGGAGTGCA_-_ATGATTGTGGGGTATGGATTGCATGGGTATAGTGAAGATGCCCTTCTGCTTTTTACACAAATGCGAGAGACAGATAAGAGACCAAATGAGATCACTTTCATTGGTGTTTTGGCTGCTTGTAGCCATGCAGGTCGGTTGGATGAGGGCCGTCAGTACTTTGATTGCATGACCAGAGATTATTGCATCACACCAAGTACGAAGCATTATGCATGCATGGTTGACCTTCATGGCCGAGCTGGCCAATTGGAAGATGCATATGAxxxTATAAAAAGAATGCCGTTAGAGCCTGACGCAGGTGTTTGGGGAGCCTTGCTTGGTGCCTGCAGAATCCACTGCAACATCGAGCTAGCTGAACACGTTGCAGAACACCTTTTTGCATTAGAACCTGAAAATGCAGGATATTATGTCTTACTGTCAAACATCTATGCAGCTGCTGGTAGGTGGGATAATGTAATAAAGATCAGAGTACTGATGAGAGGAAGGCGTGTGAAGAAGCCACCCGGATATAGCTTCATTGAGATGAATGGTCATATTCATGCCTTCATTGTGGGAGACAGATCACATCCTCAATCTGAGGAAATTTATGCAATGTTGGAGTCATTGGCTGAGCAGATGAAGGATGCGGGATATGTGGCTAACAAAAGTTGTGTGTTGCAGGAAGTGGCGGATGAGGTGAAAGAGCACATCCTTTGCAGTCACAGTGAGAAGCTGGCGATTGCTTTTGGGCTTATCAATA

Fln Alignment:

sp_v1.1_unigene54211___WSAMIVGYGLHGYSEDALLLFTQMRETDKRPNEITFIGVLAACSHAGRLDEGRQYFDCMTRDYCITPSTKHYACMVDLHGRAGQLEDAYExIKRMPLEPDAGVWGALLGACRIHCNIELAEHVAEHLFALEPENAGYYVLLSNIYAAAGRWDNVIKIRVLMRGRRVKKPPGYSFIEMNGHIHAFIVGDRSHPQSEEIYAMLESLAEQMKDAGYVANKSCVLQEVADEVKEHILCSHSEKLAIAFGLIN
D5ADG9_______________WNAMIVGYGMHGHGEDALVLFTQMQQRGVKPNEITFISVLSACSHAGLVDEGWKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDxIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVKKSPGCSLIEVNNKLHSFVVGDISHPQTEAIYAMLETLARQMEAVGYVPCTDFVLHDVEEEIKENMLFAHSEKLAIAFGLIS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain