SustainPineDB

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Assembly info
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SNPs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54192

Length: 384 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene54192
CGTCGTGACCTTGGCTGTCACTCAGGTCTATATAGAGGTTTTGGTGCTGTTGTTATTGGTGTCGTTCCTTGTCTGTTACTTTTTCTTACTACCTTAGAGACGACAAAAATTGGAGCTCTAAGAGTCACAGAGAAACTAAATCTTTCAGAGCCAACACAAGTAGCAATAGCAAATGGTGTTGCTGGAATGATGTCATCTCTTGCGGCACAGTCTGTCTTTGTTCCACTTGATGTGGTAAAACATACAGCCATTAGTTTTCTATATTTTGACTTCCTTGGTGCATAAATTAGACCTTAATTATTTGAAATGATGACATCAATTGCACCTTCATTAATGTATCAAATAAATGTTTCTGATTATTGCAGTCTGCTTTTTACCATTGAT

Ace file of the UniGene sp_v1.1_unigene54192

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial carrier protein n=1 Tax=Phaseolus vulgaris RepID=Q69FA0_PHAVU	-	-	9.0e-14	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	mitochondrial carrier protein	-	-	1.00657e-21	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.00657e-21	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACT4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 123 aas, your sequence is shorter than subject: 95 - 318

Fln protein: RRDLGCHSGLYRGFGAVVIGVVPCLLLFLTTLETTKIGALRVTEKLNLSEPTQVAIANGVAGMMSSLAAQSVFVPLDVVKHTAISFLYFDFLGA*

Protein Length: 96

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCTATATAGAGGTTTTGGTGCTGTTGTTATTGGTGTCGTTCCTTGTCTGTTACTTTTTCTTACTACCTTAGAGACGACAAAAATTGGAGCTCTAAGAGTCACAGAGAAACTAAATCTTTCAGAGCCAACACAAGTAGCAATAGCAAATGGTGTTGCTGGAATGATGTCATCTCTTGCGGCACAGTCTGTCTTTGTTCCACTTGATGTGGTAAAACATACAGCCATTAGTTTTCTATATTTTGACTTCCTTGGTGCATAAATTAGACCTTAATTATTTGAAATGATGACATCAATTGCACCTTCATTAATGTATCAAATAAATGTTTCTGATTATTGCAGTCTGCTTTTTACCATTGAT

Fln Alignment:

sp_v1.1_unigene54192___SGLYRGFGAVVIGVVPCXXXXXXXXXXXKIGALRVTEKLNLSEPTQVAIANGVAGMMSSLAAQSVFVPLDVV
D5ACT4_______________SGLYRGFGTVVIGAVPGRVIFLTTLETTKIGALRITEKLNLSEPTQVAIANGVAGMMSSLAAQSVFVPLDVV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
167		75	25		0.996479
168	75		25		0.996479

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain