SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene53962

Length: 414 nt

UniGene Fasta

>sp_v1.1_unigene53962
GTATGGAACACTATTATTCGACTCCTGGCTATGTGCTATATTGGCTTGTCCGTTCTGCCCCCTGCTCACATGCTTCGTTTGCAGAATGGACGCTTTGACACACCCGATCGACTTTTTGTTAGCATGGAAGAATCTTGGCAAAATGTGCTAAATAATACTGCTGACCTGAAGGAGCTTATTCCAGAATTTTTCAGTTTACCATCTGATTTTCTTAGAATAAGGGATAACTTGAAATTTGGAACACGACAGAGAGGAGACATTGTCGGGGATGTAATATTGCCACCATGGGCAAATGATGCAGATGATTTCATTATTAAACATAGAGAAGCTCTGGAATGTGAGCATGTTTCTCAACATCTGCATGAATGGATAGACCTCATTTTTGGTATAAGCAGCGTGGAATGGCTGCTTTGG

Ace file of the UniGene sp_v1.1_unigene53962

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BEACH domain-containing protein	-	-	5.0e-34	56%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	70%
Blast2go	beach domain-containing protein	-	-	6.5861e-44	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	BEACH domain	IPR000409	-	6.5861e-44	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8T4H0

Fln msg: Distance to subject end: 531 aas, your sequence is shorter than subject: 138 - 1080

Fln protein: VWNTIIRLLAMCYIGLSVLPPAHMLRLQNGRFDTPDRLFVSMEESWQNVLNNTADLKELIPEFFSLPSDFLRIRDNLKFGTRQRGDIVGDVILPPWANDADDFIIKHREALECEHVSQHLHEWIDLIFGISSVEWLLW

Protein Length: 139

Fln nts: GTATGGAACACTATTATTCGACTCCTGGCTATGTGCTATATTGGCTTGTCCGTTCTGCCCCCTGCTCACATGCTTCGTTTGCAGAATGGACGCTTTGACACACCCGATCGACTTTTTGTTAGCATGGAAGAATCTTGGCAAAATGTGCTAAATAATACTGCTGACCTGAAGGAGCTTATTCCAGAATTTTTCAGTTTACCATCTGATTTTCTTAGAATAAGGGATAACTTGAAATTTGGAACACGACAGAGAGGAGACATTGTCGGGGATGTAATATTGCCACCATGGGCAAATGATGCAGATGATTTCATTATTAAACATAGAGAAGCTCTGGAATGTGAGCATGTTTCTCAACATCTGCATGAATGGATAGACCTCATTTTTGGTATAAGCAGCGTGGAATGGCTGCTTTGG

Fln Alignment:

sp_v1.1_unigene53962___PAHMLRLQNGRFDTPDRLFVSMEESWQNVLNNTADLKELIPEFFSLPSDFLRIRDNLKFGTRQRGDIVGDVILPPWANDADDFIIKHREALECEHVSQHLHEWIDLIFG
D8T4H0_______________PAHMLRLQNGRFDTPDRLFFSIGESWQSVLTNHADVKELIPEFYGLPSGFLVTRNDVNLGVRQNGVPVGDVTLPPWAKDPDDFLIKNRRALECKHVSMNIQEWIDLIFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain