SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene53937

Length: 485 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene53937
CGTCGTGACCTTGGCTGTCACTCAAGGAGAGATTCAGGAGTTGTCTAGGATATCGGAGCCTTCTGTGAGAGTAGTGCTGAATGTAGGTCCTGCTCATACGGAGAATTTCAGGAGCTTGGAGGAGGTTGCCATGGCTAAAGGGGAGATTGTGCTAGAGGCGAGGCCTGGAGATGTCTGTGTGTTGAACGCTGATGATCCTTTGGTTATGAACCTTCCAATTCCAAATGGGGTGCAAAGAGTTCTCTTTGGAAGCAAGGTTGGTTGTGATGTGCGATTAATTGCTGCACAAAGTACACAGGGAGGCTGTGCAGTTCAGGTTACATTAGAGCATTGTTCCTCTGCAAATTCATTGCTAGGGATTGAGAGTAAAGAAAGTCAACGAGAGAATCTGTCGGCTTAGAAGGGGATACAAATAGCAAGAGTTCTAGTTCAAGAGTGGTATTTGTAGATCCCCAGTCCTGGGCTACATCTAGCCATGAATGCCT

Ace file of the UniGene sp_v1.1_unigene53937

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-N-acetylmuramyl pentapeptide synthase; K01929 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [EC:6.3.2.10]	-	-	2.0e-14	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase	-	-	5.79113e-33	62%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:6.3.2.1-	-	2.0e-14	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMX3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 171 aas, your sequence is shorter than subject: 149 - 583

Fln protein: VVTLAVTQGEIQELSRISEPSVRVVLNVGPAHTENFRSLEEVAMAKGEIVLEARPGDVCVLNADDPLVMNLPIPNGVQRVLFGSKVGCDVRLIAAQSTQGGCAVQVTLEHCSSANSLLGIESKESQRENLSA*KGIQIARVLVQEWYL*

Protein Length: 150

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGAGAGATTCAGGAGTTGTCTAGGATATCGGAGCCTTCTGTGAGAGTAGTGCTGAATGTAGGTCCTGCTCATACGGAGAATTTCAGGAGCTTGGAGGAGGTTGCCATGGCTAAAGGGGAGATTGTGCTAGAGGCGAGGCCTGGAGATGTCTGTGTGTTGAACGCTGATGATCCTTTGGTTATGAACCTTCCAATTCCAAATGGGGTGCAAAGAGTTCTCTTTGGAAGCAAGGTTGGTTGTGATGTGCGATTAATTGCTGCACAAAGTACACAGGGAGGCTGTGCAGTTCAGGTTACATTAGAGCATTGTTCCTCTGCAAATTCATTGCTAGGGATTGAGAGTAAAGAAAGTCAACGAGAGAATCTGTCGGCTTAGAAGGGGATACAAATAGCAAGAGTTCTAGTTCAAGAGTGGTATTTGTAGATCCCCAGTCCTGGGCTACATCTAGCCATGAATGCCT

Fln Alignment:

sp_v1.1_unigene53937___LVMNLPIPNGVQ-RVLFGSKVGCDVRLIAAQSTQGGCAVQVTLEHCSSANSLLGIESK-ESQRENLSA*KGIQIARVLVQEWYL*IPSPGLHLAMNA
B8LMX3_______________VVLQSIINHGVDIKVLFGSKVGCDVRLIAAQSTQGGCAVQVTLEHCSSVNSLLGYESKRKSMRESIGL-EGDTNSKSSSLRVVFEIPSPGLHLAMNA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain