SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene53876

Length: 432 nt

UniGene Fasta

>sp_v1.1_unigene53876
TGATGGAATGTCCTCAACTGTAGAACCAGAAAAACATGATCATCAAATAGAGATTGGTGAAACAGCATTTGATAAGCCAGATGTGGGATTGAGGAGGAATGGTGATAACAAAAATATTCTCTCCCCTGAAATACAAGAACGTCTTCAAAAGTGTGTTCTACCTGAGATAAATAAGTTGATGATATCTCACTCAAATGTGGTTAATATTTCAGTTAGTCGTGTTGCACTGAAGTTATTGAAACTTATGCCTTTGGAAACAATGGAGTCAGAGCTTCCTCGTATTATACAGCAAATTGCAAATCTACTGAAGAGTCGCCCTCATTCTGTAAGAGATGAGGCAAGGGCTTGCTTAGCTGCATGTGCCAAGGAATTAGGACCACAGTATTTGCAGTTCATTGTAAAAACACTACAGACAACATTAACAAGGGGATA

Ace file of the UniGene sp_v1.1_unigene53876

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	47%
Blast2go	protein	-	-	4.22569e-20	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	4.22569e-20	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo-like helical	IPR011989	-	4.22569e-20	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RWC2

Fln msg: Distance to subject end: 803 aas, your sequence is shorter than subject: 143 - 2535

Fln protein: DGMSSTVEPEKHDHQIEIGETAFDKPDVGLRRNGDNKNILSPEIQERLQKCVLPEINKLMISHSNVVNISVSRVALKLLKLMPLETMESELPRIIQQIANLLKSRPHSVRDEARACLAACAKELGPQYLQFIVKTLQTTLTRG

Protein Length: 144

Fln nts: TGATGGAATGTCCTCAACTGTAGAACCAGAAAAACATGATCATCAAATAGAGATTGGTGAAACAGCATTTGATAAGCCAGATGTGGGATTGAGGAGGAATGGTGATAACAAAAATATTCTCTCCCCTGAAATACAAGAACGTCTTCAAAAGTGTGTTCTACCTGAGATAAATAAGTTGATGATATCTCACTCAAATGTGGTTAATATTTCAGTTAGTCGTGTTGCACTGAAGTTATTGAAACTTATGCCTTTGGAAACAATGGAGTCAGAGCTTCCTCGTATTATACAGCAAATTGCAAATCTACTGAAGAGTCGCCCTCATTCTGTAAGAGATGAGGCAAGGGCTTGCTTAGCTGCATGTGCCAAGGAATTAGGACCACAGTATTTGCAGTTCATTGTAAAAACACTACAGACAACATTAACAAGGGGATA

Fln Alignment:

sp_v1.1_unigene53876___EIGETAFDKPDVGLRRNGDNKNILSPEIQERLQKCVLPEINKLMXXXXXXXXXXXXXXALKLLKLMPLETMESELPRIIQQIANLLKSRPHSVRDEARACLAACAKELGPQYLQFIVKTLQTTLTRG
B9RWC2_______________EFGTDIMETGSLATLRKCDSNSVVAAEIQACLHKTVLPMMQKLLDFDSDKVNVNVNVAVLKVLKLLPGDIMDSQLPSIIHRIANHLKNRMESIRDEARLALAACLKELGLEYLKFIVGALRATLKRG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain