SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene53831

Length: 434 nt

UniGene Fasta

>sp_v1.1_unigene53831
CTGTTGCTGCATTTATGTGTTGCTCTGCCAAATGGCGGTGGCGGCGCTGGAATGCTGGGACGCGCAGAGACAGCGGTGGTCGGCGCTGTCGCGGGGCGTGGTCATGTCGCAGGCGCTGCAGGTGGTGGTGTGGTTCATAATGAGTGTGGTGACATGGGGTCTGAAGCGGCAAGGGCAGACGAAATTGCCCTTCATACTGAGGGCATGGTGGACAGTGTCGCTGGCCCTGACTCTGTGTGCTATATCCCTGGACATAGTCAAGAAGCACCAAACCGTATACATGCTCATGAACACTGCCTGCCTGCCAGCACTGGCCTTCCTGTGCTTCGTTGCGGCCAGAGGGAGAACTGGAATTGAAACCATTGTCACCAGGTCGGATCTGCAAGAGCCCCTCTTGGATTCATCGACTTATGTCGAAGAGTCCTACGGATGCG

Ace file of the UniGene sp_v1.1_unigene53831

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multi-drug resistance protein n=1 Tax=Arabidopsis thaliana RepID=Q0WNH8_ARATH	-	-	1.0e-16	35%
FL-Next	sp=ABC transporter C family member 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	35%
Blast2go	multidrug resistance protein abc transporter family	-	-	2.17025e-16	50%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	2.17025e-16	50%
Blast2go	regulation of biological quality	GO:0065008	Biological Process	2.17025e-16	50%
Blast2go	membrane	GO:0016020	Cellular Component	2.17025e-16	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7GB25

Fln msg: Distance to subject end: 1290 aas, your sequence is shorter than subject: 144 - 1514

Fln protein: CCCIYVLLCQMAVAALECWDAQRQRWSALSRGVVMSQALQVVVWFIMSVVTWGLKRQGQTKLPFILRAWWTVSLALTLCAISLDIVKKHQTVYMLMNTACLPALAFLCFVAARGRTGIETIVTRSDLQEPLLDSSTYVEESYGC

Protein Length: 145

Fln nts: CTGTTGCTGCATTTATGTGTTGCTCTGCCAAATGGCGGTGGCGGCGCTGGAATGCTGGGACGCGCAGAGACAGCGGTGGTCGGCGCTGTCGCGGGGCGTGGTCATGTCGCAGGCGCTGCAGGTGGTGGTGTGGTTCATAATGAGTGTGGTGACATGGGGTCTGAAGCGGCAAGGGCAGACGAAATTGCCCTTCATACTGAGGGCATGGTGGACAGTGTCGCTGGCCCTGACTCTGTGTGCTATATCCCTGGACATAGTCAAGAAGCACCAAACCGTATACATGCTCATGAACACTGCCTGCCTGCCAGCACTGGCCTTCCTGTGCTTCGTTGCGGCCAGAGGGAGAACTGGAATTGAAACCATTGTCACCAGGTCGGATCTGCAAGAGCCCCTCTTGGATTCATCGACTTATGTCGAAGAGTCCTACGGATGCG

Fln Alignment:

sp_v1.1_unigene53831___CCIYVLLCQMAVAALECWDAQRQRWSALSRGVVMSQALQVVVWFIMSVVTWGLKRQGQTKLPFILRAWWTVSLALTLCAISLDIVK------KHQTVYMLMNTACLPALAFLCFVAARGRTGIETIVTRSDLQEPLLDSSTYVEESYGC
Q7GB25_______________CCLYVLGVQVLVLV---YDGVKVRREVSDWFVLCFPASQSLAWFVLSFLVLHLKYKSSEKLPFLVRIWWFLAFSICLCTMYVDGRRLAIEGWSRCSSHVVANLAVTPALGFLCFLAWRGVSGIQVTRSSSDLQEPLL-----VEEEAAC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain