SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene53796

Length: 248 nt

UniGene Fasta

>sp_v1.1_unigene53796
TAATACTCATCTTCTGCATCATAGTCTTCGCCTTTCGTGGTTACCAACAAAGGGGCCGGGGAGGTGGTGTCGAATCGGGGATTCAAAGAATACCGACTGGGGGACTATTCCCACTGGCTGCAGAAACAAATTAACGAATCCAGCAACTGGAACAAGATCCAGAGCTGTATTCAAGATGCCGATATCTGCAAGAAATTCGCTGATGCAGGGTAGACCAGACAATGGAAGAGTTTTATAGCAGTAATTTA

Ace file of the UniGene sp_v1.1_unigene53796

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	senescence-associated protein DH	-	-	4.0e-17	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	senescence-associated protein dh	-	-	1.76532e-18	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRM9

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 104 aas, your sequence is shorter than subject: 71 - 269

Fln protein: *YSSSAS*SSPFVVTNKGAGEVVSNRGFKEYRLGDYSHWLQKQINESSNWNKIQSCIQDADICKKFADAG*

Protein Length: 72

Fln nts: TAATACTCATCTTCTGCATCATAGTCTTCGCCTTTCGTGGTTACCAACAAAGGGGCCGGGGAGGTGGTGTCGAATCGGGGATTCAAAGAATACCGACTGGGGGACTATTCCCACTGGCTGCAGAAACAAATTAACGAATCCAGCAACTGGAACAAGATCCAGAGCTGTATTCAAGATGCCGATATCTGCAAGAAATTCGCTGATGCAGGGTAGACCAGACAATGGAAGAGTTTTATAGCAGTAATTTA

Fln Alignment:

sp_v1.1_unigene53796___FVVTNKGAGEVVSNRGFKEYRLGDYSHWLQKQINESSNWNKIQSCIQDADICKKFAD
A9NRM9_______________FVVTNKGVGEVVSNRGYKEYRLGDYSNWLQKRVENTANWKRIRSCIIDAKVCKSLAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain