SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene53777

Length: 361 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene53777
AATCCAGTCCGCAATTGACGATTTTCTACGGTGGAACTGTGAACGTATATGACGATATTCCTGCAGATAAGGCCAAGGGCATAATGTTAATGGCCAGCAGTGGAAATTATATCAGTTTTCCACATAATAATATCGAGGACGGCTGTGGATCGCACGCCTGGCGGAAAATATCAGGGATGAACTTATCTGAACAATCGGGGATCAATTCCTTACCTCTAAGTAGCAAGGTGAACAAAGATATTCCAATAGCGAGGAAGCATTCCCTGCAATGTTTTCTGGAGAAGCGCAAGGCCAGGGTGAACGCAAAAGCGAGGTGTCCATATAAGATAGAAGAAGCAGAGCCTCACTAACGTCCATCATC

Ace file of the UniGene sp_v1.1_unigene53777 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ZIM motif family protein	-	-	6.0e-11	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	jasmonate zim domain 1	-	-	2.72908e-27	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tify	IPR010399	-	2.72908e-27	60%
Blast2go	CO/COL/TOC1, conserved site	IPR018467	-	2.72908e-27	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABM4

Fln msg: your sequence is shorter than subject: 116 - 189

Fln protein: SSPQLTIFYGGTVNVYDDIPADKAKGIMLMASSGNYISFPHNNIEDGCGSHAWRKISGMNLSEQSGINSLPLSSKVNKDIPIARKHSLQCFLEKRKARVNAKARCPYKIEEAEPH*

Protein Length: 117

Fln nts: AATCCAGTCCGCAATTGACGATTTTCTACGGTGGAACTGTGAACGTATATGACGATATTCCTGCAGATAAGGCCAAGGGCATAATGTTAATGGCCAGCAGTGGAAATTATATCAGTTTTCCACATAATAATATCGAGGACGGCTGTGGATCGCACGCCTGGCGGAAAATATCAGGGATGAACTTATCTGAACAATCGGGGATCAATTCCTTACCTCTAAGTAGCAAGGTGAACAAAGATATTCCAATAGCGAGGAAGCATTCCCTGCAATGTTTTCTGGAGAAGCGCAAGGCCAGGGTGAACGCAAAAGCGAGGTGTCCATATAAGATAGAAGAAGCAGAGCCTCACTAA___CGTCCATCATC

Fln Alignment:

sp_v1.1_unigene53777___SSPQLTIFYGGTVNVYDDIPADKAKGIMLMASSGNYISFPHNNIEDGCGSHAWRKIS--GMNLSEQSGINSLPLSSKV---NKDIPIARKHSLQCFLEKRKARVNAKARCPYKIEEAE
D5ABM4_______________SSAKLSIFYGGTVYIYDDIPTDKAQAIMLMASSGNYSSYPHTKVHNGWGSQTEQKLSVPVIKLSNGSGIHPQTSSPKLRTGSSDIPIARKHSLQRFLQNRRDRVNANAKGPYKTAEAE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain