SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene53744

Length: 420 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene53744
TCCCTGTTGATCAAAGCCTTCACTGATAGAAATTTACCTTTGCGGGCTATTGAAATATTGGGGTTGATGCAGGAATCTCGAGTAAAAATCGGTGATGTGGATTATGCTAGAGTTATTCACGCTAGTGTGAAAGCAGGATTGATTGAAGAGGCCATTAAGGTTTATAATACTTTAAAAAGGACTGGATCGGGTTACTGACGAGTCAACTGATTTGGCCATGCTTTGTGTTTTCTGTAAGGCAGAAATGCAAAATTCTGCTGAAAATCTCTTCAAAGAAATGAGCAGTAAAGGTTCTTTGAAGCGCGAGGAAGCTTACCTGTATATGATGACTTTGTATGGGAATCTGGGAAGACTGGAGGATGTAATGAGAATTTTCCAGTCAATGAAACAAAATGGGTGTAATGTAAATGTGGATGCTTA

Ace file of the UniGene sp_v1.1_unigene53744 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	3.0e-08	44%
FL-Next	sp=Pentatricopeptide repeat-containing protein At5g13770, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	25%
Blast2go	unnamed protein product [Vitis vinifera]	-	-	5.05459e-11	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	5.05459e-11	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q66GP4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 148 aas, your sequence is shorter than subject: 66 - 609

Fln protein: SLLIKAFTDRNLPLRAIEILGLMQESRVKIGDVDYARVIHASVKAGLIEEAIKVYNTLKRTGSGY*

Protein Length: 67

Fln nts: TCCCTGTTGATCAAAGCCTTCACTGATAGAAATTTACCTTTGCGGGCTATTGAAATATTGGGGTTGATGCAGGAATCTCGAGTAAAAATCGGTGATGTGGATTATGCTAGAGTTATTCACGCTAGTGTGAAAGCAGGATTGATTGAAGAGGCCATTAAGGTTTATAATACTTTAAAAAGGACTGGATCGGGTTACTGACGAGTCAACTGATTTGGCCATGCTTTGTGTTTTCTGTAAGGCAGAAATGCAAAATTCTGCTGAAAATCTCTTCAAAGAAATGAGCAGTAAAGGTTCTTTGAAGCGCGAGGAAGCTTACCTGTATATGATGACTTTGTATGGGAATCTGGGAAGACTGGAGGATGTAATGAGAATTTTCCAGTCAATGAAACAAAATGGGTGTAATGTAAATGTGGATGCTTA

Fln Alignment:

sp_v1.1_unigene53744___IEILGLMQESRVKIGDVDYARVIHASVKAGLIEEAIKVY
Q66GP4_______________LEVVAAMRKAELKVTDCILCAIVNGFSKQRGFAEAVKVY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain