SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene53624

Length: 329 nt

UniGene Fasta

>sp_v1.1_unigene53624
CGTTCCAGTTTCTGGTAACATAGTCCAACAACGGGATTTTTACAGGGGACCAGGGAACATGCCACTGCACCTTGATGCTCTAGGAGGCTTTGGAATTTGTGCGAGAATTGTTGCATCCTTTGCCATGAGTCGCAACAAACATACTCCTCTCATGATGCCCGCCATGTATGGGAAGGTTTCTTGCATTCAAAGGCTTCTGCAAGCTAGTGCAAATATACTGTTGTTTGACTCGTTGCATCGGATAAATTGCTTGCACTATGCAGCAAACAATGCGCACACTAACTGCTTGGAAGCCATTCTCTCAATTGCCTAGTCTACTCTCGTTGCAG

Ace file of the UniGene sp_v1.1_unigene53624

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Putative E3 ubiquitin-protein ligase XBAT31; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Blast2go	ring zinc finger ankyrin protein	-	-	1.15801e-17	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	1.15801e-17	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	1.15801e-17	75%
Blast2go	protein autoubiquitination	GO:0051865	Biological Process	1.15801e-17	75%
Blast2go	kinase activity	GO:0016301	Molecular Function	1.15801e-17	75%
Blast2go	protein binding	GO:0005515	Molecular Function	1.15801e-17	75%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	1.15801e-17	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ankyrin repeat	IPR002110	-	1.15801e-17	75%
Blast2go	Ankyrin repeat-containing domain	IPR020683	-	1.15801e-17	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94B55

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 314 aas, your sequence is shorter than subject: 104 - 456

Fln protein: VPVSGNIVQQRDFYRGPGNMPLHLDALGGFGICARIVASFAMSRNKHTPLMMPAMYGKVSCIQRLLQASANILLFDSLHRINCLHYAANNAHTNCLEAILSIA*

Protein Length: 105

Fln nts: CGTTCCAGTTTCTGGTAACATAGTCCAACAACGGGATTTTTACAGGGGACCAGGGAACATGCCACTGCACCTTGATGCTCTAGGAGGCTTTGGAATTTGTGCGAGAATTGTTGCATCCTTTGCCATGAGTCGCAACAAACATACTCCTCTCATGATGCCCGCCATGTATGGGAAGGTTTCTTGCATTCAAAGGCTTCTGCAAGCTAGTGCAAATATACTGTTGTTTGACTCGTTGCATCGGATAAATTGCTTGCACTATGCAGCAAACAATGCGCACACTAACTGCTTGGAAGCCATTCTCTCAATTGCCTAGTCTACTCTCGTTGCAG

Fln Alignment:

sp_v1.1_unigene53624___MSRNKHTPLMMPAMYGKVSCIQRLLQASANILLFDSLHRINCLHYAANNAHTNCLEAILSIA*STLVA
Q94B55_______________LNRHKQTPLMLAAMYGRISCVKKLAEVGANILMFDSVNRRTCLHYAAYYGHANCVQAILSAAQSSPVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain