SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene53598

Length: 243 nt

UniGene Fasta

>sp_v1.1_unigene53598
GCAAATTGGACAAGGTGGCTATGGTAAGGTTTACAAAGGCATTTTGAATGATGGTACAATAGTGGCTATAAAGCGTGCCCAAGAGGGATCTTTGCAAGGAGAAAGAGAATTCTCGAATGAAATAGAGTTGTTATCTCGAGTGCACCATCGGAACCTTGTTTCACTTTTAGGCTACTGTGATGATCAAGGCGAGCAGATGTTGGTTTAATGAATTCATGGGAAATGGAACACTACGGGATCATC

Ace file of the UniGene sp_v1.1_unigene53598

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat transmembrane protein kinase, putative	-	-	1.0e-26	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	leucine-rich repeat transmembrane protein kinase	-	-	3.76654e-28	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	3.76654e-28	91%
Blast2go	kinase activity	GO:0016301	Molecular Function	3.76654e-28	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.76654e-28	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	3.76654e-28	91%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	3.76654e-28	91%
Blast2go	Protein kinase-like domain	IPR011009	-	3.76654e-28	91%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	3.76654e-28	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL62

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 228 aas, your sequence is shorter than subject: 69 - 443

Fln protein: QIGQGGYGKVYKGILNDGTIVAIKRAQEGSLQGEREFSNEIELLSRVHHRNLVSLLGYCDDQGEQMLV*

Protein Length: 70

Fln nts: GCAAATTGGACAAGGTGGCTATGGTAAGGTTTACAAAGGCATTTTGAATGATGGTACAATAGTGGCTATAAAGCGTGCCCAAGAGGGATCTTTGCAAGGAGAAAGAGAATTCTCGAATGAAATAGAGTTGTTATCTCGAGTGCACCATCGGAACCTTGTTTCACTTTTAGGCTACTGTGATGATCAAGGCGAGCAGATGTTGGTTTAATGAATTCATGGGAAATGGAACACTACGGGATCATC

Fln Alignment:

sp_v1.1_unigene53598___IGQGGYGKVYKGILNDGTIVAIKRAQEGSLQGEREFSNEIELLSRVHHRNLVSLLGYCDDQGEQMLV
B8LL62_______________IGQGAFGPVYKAMMPTGETVAVKVLATNSSQGEREFQTEVMLLGRLHHRNLVNLVGYCVDKGERMLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain