SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene53457

Length: 292 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene53457
CGTCGTGACCTTGGCTGTCACTCACTTGTGTGGTTGTTAATGCTGTCAAATGTGGTTGCTATTTTATGTCAGTGTCTCGCATCTCGCATTGGAGTCGTGACTGGGAAACATCTTGCTCAGATTTGTGGTGAGGAGTACTCTCGACCCGTGTGCATGTTGCTGTGGCTACAATGTGAGGCCTCTGTGATAGCGCTGGATTTAACAGTGATTCTAGGAACTGCTATTGGAATTAATCTTCTACTGGAGCTGGATATGTTTGTGTGTGTAATCCTGAGCACAGTCGATGCTACTT

Ace file of the UniGene sp_v1.1_unigene53457

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EIN2 -like protein, nramp transporter	-	-	1.0e-20	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	ein2 -like nramp transporter	-	-	2.87088e-24	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	2.87088e-24	72%
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	2.87088e-24	72%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	2.87088e-24	72%
Blast2go	negative regulation of defense response	GO:0031348	Biological Process	2.87088e-24	72%
Blast2go	response to salt stress	GO:0009651	Biological Process	2.87088e-24	72%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	2.87088e-24	72%
Blast2go	auxin polar transport	GO:0009926	Biological Process	2.87088e-24	72%
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	2.87088e-24	72%
Blast2go	response to heat	GO:0009408	Biological Process	2.87088e-24	72%
Blast2go	leaf senescence	GO:0010150	Biological Process	2.87088e-24	72%
Blast2go	root hair cell differentiation	GO:0048765	Biological Process	2.87088e-24	72%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	2.87088e-24	72%
Blast2go	establishment of planar polarity	GO:0001736	Biological Process	2.87088e-24	72%
Blast2go	defense response to fungus	GO:0050832	Biological Process	2.87088e-24	72%
Blast2go	protein binding	GO:0005515	Molecular Function	2.87088e-24	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Natural resistance-associated macrophage protein	IPR001046	-	2.87088e-24	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AE42

Fln msg: Distance to subject end: 329 aas, your sequence is shorter than subject: 97 - 514

Fln protein: RRDLGCHSLVWLLMLSNVVAILCQCLASRIGVVTGKHLAQICGEEYSRPVCMLLWLQCEASVIALDLTVILGTAIGINLLLELDMFVCVILSTVDAT

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTGTGTGGTTGTTAATGCTGTCAAATGTGGTTGCTATTTTATGTCAGTGTCTCGCATCTCGCATTGGAGTCGTGACTGGGAAACATCTTGCTCAGATTTGTGGTGAGGAGTACTCTCGACCCGTGTGCATGTTGCTGTGGCTACAATGTGAGGCCTCTGTGATAGCGCTGGATTTAACAGTGATTCTAGGAACTGCTATTGGAATTAATCTTCTACTGGAGCTGGATATGTTTGTGTGTGTAATCCTGAGCACAGTCGATGCTACTT

Fln Alignment:

sp_v1.1_unigene53457___HSLVWLLMLSNVVAILCQCLASRIGVVTGKHLAQICGEEYSRPVCMLLWLQCEASVIALDLTVILGTAIGINLL
D5AE42_______________YSLLWLLMWATAMGLLIQLLAARLGVATGRHLAELCRLQYPPVPRITLWLMAEIALIGADIQEVIGSAIAIKVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain