SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene53360

Length: 387 nt

UniGene Fasta

>sp_v1.1_unigene53360
CGTCGTGACCTTGGCTGTCACTCAGTTTTCCTCTCTGCAACACCCAACGCCATATCGTCGTGACCTTGGCGTGATCATTCCCTCTGCTGGCCTTCAGGGATGGATTAGCCAACTCGTCCCGCCGTCTTCTGCATTGGGACGAAACCGATTTTTCTTCCCACTGTTCATGGACGGGCGTTTCCTGCTATGAAGATGGAATTACAGTGAGGGCATTGAATCTTTCCGCCTACGGCTTGGAGGGTAAATTGGCGCCTGAGTTAGGAGAGCTGAGGGGCATTGTGTCTCTCGACATGAGCTACAACTCGCTCTCAGGACAAATCCCTCCAGAGCTTTCTAACTGCAGCAGATTGCAGACTCTGTTCTTGAACAACAATCATTTCTCGGGTT

Ace file of the UniGene sp_v1.1_unigene53360

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat transmembrane protein kinase, putative	-	-	7.0e-17	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	protein	-	-	2.73013e-19	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.73013e-19	61%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLZ2

Fln msg: Distance to subject end: 386 aas, atg_distance in limit (1-15): atg_distance = 1, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 104 - 514

Fln protein: SFPLLAFRDGLANSSRRLLHWDETDFSSHCSWTGVSCYEDGITVRALNLSAYGLEGKLAPELGELRGIVSLDMSYNSLSGQIPPELSNCSRLQTLFLNNNHFSG

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTCCTCTCTGCAACACCCAACGCCATATCGTCGTGACCTTGGCGTGATCATTCCCTCTGCTGGCCTTCAGGGATGGATTAGCCAACTCGTCCCGCCGTCTTCTGCATTGGGACGAAACCGATTTTTCTTCCCACTGTTCATGGACGGGCGTTTCCTGCTATGAAGATGGAATTACAGTGAGGGCATTGAATCTTTCCGCCTACGGCTTGGAGGGTAAATTGGCGCCTGAGTTAGGAGAGCTGAGGGGCATTGTGTCTCTCGACATGAGCTACAACTCGCTCTCAGGACAAATCCCTCCAGAGCTTTCTAACTGCAGCAGATTGCAGACTCTGTTCTTGAACAACAATCATTTCTCGGGTT

Fln Alignment:

sp_v1.1_unigene53360___LLAFRDGLANSSRRLL-HWDETDFSSHCSWTGVSCYEDGITVRALNLSAYGLEGKLAPELGELRGIVSLDMSYNSLSGQIPPELSNCSRLQTLFLNNNHFSG
B8LLZ2_______________LLAFKDAIYDDPNAVLSNWNALD-EQPCNWSGINCSPSGTSVQALNLPRSSLKGFLAPELGLLASLQTLNLRANNILGAIPRELGRLKNLQNLDLAQNQLTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain