SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene53300

Length: 457 nt

UniGene Fasta

>sp_v1.1_unigene53300
CGTCGTGACCTTGGCTGTCACTCAATTTACCTCGCTATTCTCTCCATTGGAGCAGTCCTCACCACCACCAATCCGATTAGCACAGAGACAGAGATCAAAAAGCGGGTTGCAGATTCGAAACCGGTAATTATCTTCACAACAGTAAATCTGATCAACAAGATTCGTGCAACCCAATTGCCCGTCATTCTCATAGAGGCAGCAAAAACAGAGGAAGGCTCTGGCGGGGGCTGTATTTCTACTTTAAACCTCCTCTTGCAGTCTGACGTTAACGGCTTTCCCCCAGTGGATATCGAACAGGAAGACACTGCGACGCTTCTCTACTCGTCGGGGACAACGGGCAAAAGCAAGGGAGTCATTTCCACCCATAGAAATCTCATTGCCATGATATCTGGAGCTCTGAGCAGAGACGATATGAAGGGCGGGAAAATATTTTTATCCATCGTCCCGCTGTTTCATG

Ace file of the UniGene sp_v1.1_unigene53300

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	4-coumarate--CoA ligase-like 5 n=2 Tax=Arabidopsis RepID=4CLL5_ARATH	-	-	2.0e-25	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	opc-8:0 ligase1	-	-	2.01141e-38	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fatty-acyl-CoA synthase.	EC:2.3.1.86	-	2.01141e-38	65%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		2.01141e-38	65%
Blast2go	Metabolic pathways	01100		2.01141e-38	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	2.01141e-38	65%
Blast2go	response to wounding	GO:0009611	Biological Process	2.01141e-38	65%
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	2.01141e-38	65%
Blast2go	fatty-acyl-CoA synthase activity	GO:0004321	Molecular Function	2.01141e-38	65%
Blast2go	peroxisome	GO:0005777	Cellular Component	2.01141e-38	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AMP-dependent synthetase/ligase	IPR000873	-	2.01141e-38	65%
Blast2go	AMP-binding, conserved site	IPR020845	-	2.01141e-38	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP93

Fln msg: Distance to subject end: 301 aas, your sequence is shorter than subject: 152 - 548

Fln protein: RRDLGCHSIYLAILSIGAVLTTTNPISTETEIKKRVADSKPVIIFTTVNLINKIRATQLPVILIEAAKTEEGSGGGCISTLNLLLQSDVNGFPPVDIEQEDTATLLYSSGTTGKSKGVISTHRNLIAMISGALSRDDMKGGKIFLSIVPLFH

Protein Length: 153

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTACCTCGCTATTCTCTCCATTGGAGCAGTCCTCACCACCACCAATCCGATTAGCACAGAGACAGAGATCAAAAAGCGGGTTGCAGATTCGAAACCGGTAATTATCTTCACAACAGTAAATCTGATCAACAAGATTCGTGCAACCCAATTGCCCGTCATTCTCATAGAGGCAGCAAAAACAGAGGAAGGCTCTGGCGGGGGCTGTATTTCTACTTTAAACCTCCTCTTGCAGTCTGACGTTAACGGCTTTCCCCCAGTGGATATCGAACAGGAAGACACTGCGACGCTTCTCTACTCGTCGGGGACAACGGGCAAAAGCAAGGGAGTCATTTCCACCCATAGAAATCTCATTGCCATGATATCTGGAGCTCTGAGCAGAGACGATATGAAGGGCGGGAAAATATTTTTATCCATCGTCCCGCTGTTTCATG

Fln Alignment:

sp_v1.1_unigene53300___IYLAILSIGAVLTTTNPISTETEIKKRVADSKPVIIFTTVNLINKIRATQLPVILIEAAKTEEGSGGGCISTLNLLLQSDVNGFPPVDIEQEDTATLLYSSGTTGKSKGVISTHRNLIAMISGALSRDDMKGGKIFLSIVPLFH
B8LP93_______________IHLAILSIGAILTTANPLSTEREIVTQVKDSKPVIAFTLSHLIHKLRATQIPIILIQGTLESR-----CVTTLHDLLQSDLKDMPSIDIKQDDTATLLYSSGTTGKSKGVVSTHGNYIATIAGNRVRYETEGCKMYICSMPLFH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain