SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene53044

Length: 440 nt

UniGene Fasta

>sp_v1.1_unigene53044
CGTCGTGACCTTGGCTGTCACTCATTCTAGACTGTGGCAATGGGAAAAATATTGCTTCATATATTACTCCACCACGTTCACAGTGGCTACAAAGTTCTCAGGCATCGAATACTTGCCTTGTGATGCAGCAACAACCTTTATTCGATTATGGGATATATGTGAATGCAGTTTATGTCACTCTTGAGACTAAAATTATCAGCAAGTATCTCTACTCCCTTTGTTGGGGTTTCTTGCAATTAAGCACAATGGCAAATAATTTGGTCCCAAGTTTATTTGTCTGGGAGGTTTTGTTTACAATCATTGTGATTGGATCGGGACTTCTCCTCTTTGCACTACTTATTGGAAATATGCAGACTTATCTTCTATTTCTTGGTCGTCGGTATGAATATATGTTAACTCTTATCCCTTTGATCACACGCCTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene53044

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclic nucleotide-gated ion channel, putative	-	-	7.0e-25	46%
FL-Next	sp=Probable cyclic nucleotide-gated ion channel 20, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	cyclic nucleotide-binding transporter 1	-	-	1.87631e-28	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	1.87631e-28	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LD37

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 223 aas, your sequence is shorter than subject: 144 - 764

Fln protein: S*PWLSLILDCGNGKNIASYITPPRSQWLQSSQASNTCLVMQQQPLFDYGIYVNAVYVTLETKIISKYLYSLCWGFLQLSTMANNLVPSLFVWEVLFTIIVIGSGLLLFALLIGNMQTYLLFLGRRYEYMLTLIPLITRLRSE*

Protein Length: 145

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTAGACTGTGGCAATGGGAAAAATATTGCTTCATATATTACTCCACCACGTTCACAGTGGCTACAAAGTTCTCAGGCATCGAATACTTGCCTTGTGATGCAGCAACAACCTTTATTCGATTATGGGATATATGTGAATGCAGTTTATGTCACTCTTGAGACTAAAATTATCAGCAAGTATCTCTACTCCCTTTGTTGGGGTTTCTTGCAATTAAGCACAATGGCAAATAATTTGGTCCCAAGTTTATTTGTCTGGGAGGTTTTGTTTACAATCATTGTGATTGGATCGGGACTTCTCCTCTTTGCACTACTTATTGGAAATATGCAGACTTATCTTCTATTTCTTGGTCGTCGGTATGAATATATGTTAACTCTTATCCCTTTGATCACACGCCTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene53044___ILDCGNGKNIASYITPPRSQWLQSSQASNTCLVMQQQPLFDYGIYVNAVYVTLETKIISKYLYSLCWGFLQLSTMANNLVPSLFVWEVLFTIIVIGSGLLLFALLIGNMQTYLLFLGRR
Q9LD37_______________LIDCGNGNSSVLV----RATWKDNASA-NACF---QEDGFPYGIYLKAVNLTNHSNLFTRYSYSLFWGFQQISTLAGNQVPSYFLGEVFFTMGIIGLGLLLFALLIGNMQNFLQALGKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain