SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene52984

Length: 488 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene52984
CGTCGTGACCTTGGCTGTCACTCAGTTTTGAAGCGTTTATAATTTTTATAATTTCCGCAGGGCTTGGGGTTCTGCTGTTGGTTCAGATGTTGTGAATATGCCTATGGTTTGGAATGGAGGCGTACCGGTGAATACCCAACAACTTGATATGGCAGCACTTCTCACAGCATTTCTTACATTTCTTCTGGCTGGGCTCCCTGTCTTCTGTTTTTTCGTCAACAAACACAGAAGGGCTTCGCCGGGAATTCCACCTGGAGCCTTCGCATGGGATTTCATTGGTGAGATATTTCAATTCCTGGGATGTTATTGGAATCTCAATCTCCGTGAACTTTATGACAATCGAACGCAGAAATATGGAAGTCTGTTCACAACTTCCATTTTCTGCGAACCAACCATTGTATTTTACAGTCCTGATGGCAACCGCTTCCTGTTTGCCAACGAGTACAAACTGGTAGTCAGCACATGGCCGAGACCAGTGGGAAAGCTTT

Ace file of the UniGene sp_v1.1_unigene52984

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 716B2 n=2 Tax=Picea sitchensis RepID=C16B2_PICSI	-	-	6.0e-27	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	cytochrome p450	-	-	0.0	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLP7

Fln msg: Distance to subject end: 267 aas, your sequence is shorter than subject: 130 - 401

Fln protein: MPMVWNGGVPVNTQQLDMAALLTAFLTFLLAGLPVFCFFVNKHRRASPGIPPGAFAWDFIGEIFQFLGCYWNLNLRELYDNRTQKYGSLFTTSIFCEPTIVFYSPDGNRFLFANEYKLVVSTWPRPVGKL

Protein Length: 131

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTGAAGCGTTTATAATTTTTATAATTTCCGCAGGGCTTGGGGTTCTGCTGTTGGTTCAGATGTTGTGAAT_-_ATGCCTATGGTTTGGAATGGAGGCGTACCGGTGAATACCCAACAACTTGATATGGCAGCACTTCTCACAGCATTTCTTACATTTCTTCTGGCTGGGCTCCCTGTCTTCTGTTTTTTCGTCAACAAACACAGAAGGGCTTCGCCGGGAATTCCACCTGGAGCCTTCGCATGGGATTTCATTGGTGAGATATTTCAATTCCTGGGATGTTATTGGAATCTCAATCTCCGTGAACTTTATGACAATCGAACGCAGAAATATGGAAGTCTGTTCACAACTTCCATTTTCTGCGAACCAACCATTGTATTTTACAGTCCTGATGGCAACCGCTTCCTGTTTGCCAACGAGTACAAACTGGTAGTCAGCACATGGCCGAGACCAGTGGGAAAGCTTT

Fln Alignment:

sp_v1.1_unigene52984___VNMPMVWNGGVPVNTQQLDMXXXXXXXXXXXXXGLPVFCFFVNKHRRASPGIPPGAFAWDFIGEIFQFLGCYWNLNLRELYDNRTQKYGSLFTTSIFCEPTIVFYSPDGNRFLFANEYKLVVSTWPRPVGKL
B8LLP7_______________MDQAMDWNGGVQIKTQQLEMPALFTAFLAILLSVLLVFFSVINKYRKLSLEIPPGAFAWDFIAEIFQFLGCHWNLNIREFYDSRTQKYGSLFTSSMYCEPTIVFYSPEGNRFLFANENKLVVSTWPRSVGKL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
145		20		80	0.995495
147	80			20	0.995495
148		20		80	0.995495
149	80		20		0.995495
152	20		80		0.995495
154	80	20			0.995495
155			80	20	0.995495
156		75		25	0.996473
157	75		25		0.996473
158		75	25		0.996473
159		25		75	0.996473
161		75	25		0.996473
167			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain