SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene52928

Length: 340 nt

UniGene Fasta

>sp_v1.1_unigene52928
GTGGGCTGCAGTACTTGGACTTGAGCTTTAATAAGTTTACAGGAGGAATTCCAAATTCCTTCCAAAATATGAGTTCTCTGCTATTTTTGTTCCTTGGAGATAACAACTTATCAGGAAAACTTCCTTCCCAAAGGAGTGCATCACTTGCATACATAGATCTATCTTACAACCATTTTTCAGGTGCTCTTCCAACATGGATTGGTGACAAGAATTTGAAAGTGAATTTGGTGGGAAATTACTTCACAACAAATGAAACTGATAATAGCCCTACCACAAGAGGATTAAGTTGCCTCCAACGGACCTTTCCTTGCAATAGAGGAGCTCCACGTTATTCCGATTT

Ace file of the UniGene sp_v1.1_unigene52928

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RI14_RICCO	-	-	5.0e-28	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	atp binding	-	-	9.30892e-28	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.30892e-28	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	9.30892e-28	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 302 aas, your sequence is shorter than subject: 112 - 551

Fln protein: GLQYLDLSFNKFTGGIPNSFQNMSSLLFLFLGDNNLSGKLPSQRSASLAYIDLSYNHFSGALPTWIGDKNLKVNLVGNYFTTNETDNSPTTRGLSCLQRTFPCNRGAPRYSD

Protein Length: 113

Fln nts: GTGGGCTGCAGTACTTGGACTTGAGCTTTAATAAGTTTACAGGAGGAATTCCAAATTCCTTCCAAAATATGAGTTCTCTGCTATTTTTGTTCCTTGGAGATAACAACTTATCAGGAAAACTTCCTTCCCAAAGGAGTGCATCACTTGCATACATAGATCTATCTTACAACCATTTTTCAGGTGCTCTTCCAACATGGATTGGTGACAAGAATTTGAAAGTGAATTTGGTGGGAAATTACTTCACAACAAATGAAACTGATAATAGCCCTACCACAAGAGGATTAAGTTGCCTCCAACGGACCTTTCCTTGCAATAGAGGAGCTCCACGTTATTCCGATTT

Fln Alignment:

sp_v1.1_unigene52928___LQYLDLSFNKFTGGIPNSFQNMSSLLFLFLGDNNLSGKLPSQ--RSASLAYIDLSYNHFSGALPTWIGDKNLKVNL
B8LRW5_______________LKFLWLGINKLTGSIPASFGNMSSLKNFSLGYNQLHGSIPSELGRLSQLNALYLHHNYFSGQIPPSLSNCTLLLDL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
15			33	66	0.997452
18	33		66		0.997452
19	66	33			0.997452
30		33		66	0.997458
32	66	33			0.997456

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain