SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene52862

Length: 225 nt

Origin of reads: Biogeco_2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene52862
ACCGGAAGCAGGTGGTCATTGATGGGGAGACGTGCCTGTTGGACATCCTGGATACCGCCGGCCAGGAGGAGCACAGCGCCATGCGGGACCAGTACATGCGCACCGGGGAGGGCTTCCTGTGTGTGTTTGCCATCAACAACACCAAGTCTTTTGAGGACATCCACCAGTACAGGTGAACCCCGTGAGGCTAGCCCGGGAGCCCACGCCGCACAGGTCTACAGTGCT

Ace file of the UniGene sp_v1.1_unigene52862 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to Transforming protein p21/H-Ras-1 (c-H-ras) n=1 Tax=Canis lupus familiaris RepID=UPI00005A3588	-	-	2.0e-25	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	gtpase hras	-	-	3.40179e-25	100%

Source	GOs	Term	Type	e value	Identity
Blast2go	Ras protein signal transduction	GO:0007265	Biological Process	3.40179e-25	100%
Blast2go	positive regulation of MAPK cascade	GO:0043410	Biological Process	3.40179e-25	100%
Blast2go	cell aging	GO:0007569	Biological Process	3.40179e-25	100%
Blast2go	senescence	GO:0010149	Biological Process	3.40179e-25	100%
Blast2go	mitotic cell cycle G1/S transition checkpoint	GO:0031575	Biological Process	3.40179e-25	100%
Blast2go	negative regulation of cell proliferation	GO:0008285	Biological Process	3.40179e-25	100%
Blast2go	cell cycle arrest	GO:0007050	Biological Process	3.40179e-25	100%
Blast2go	behavior	GO:0007610	Biological Process	3.40179e-25	100%
Blast2go	negative regulation of neuron apoptotic process	GO:0043524	Biological Process	3.40179e-25	100%
Blast2go	positive regulation of cell proliferation	GO:0008284	Biological Process	3.40179e-25	100%
Blast2go	anatomical structure development	GO:0048856	Biological Process	3.40179e-25	100%
Blast2go	endocytosis	GO:0006897	Biological Process	3.40179e-25	100%
Blast2go	regulation of long-term neuronal synaptic plasticity	GO:0048169	Biological Process	3.40179e-25	100%
Blast2go	positive regulation of DNA replication	GO:0045740	Biological Process	3.40179e-25	100%
Blast2go	protein C-terminus binding	GO:0008022	Molecular Function	3.40179e-25	100%
Blast2go	GTP binding	GO:0005525	Molecular Function	3.40179e-25	100%
Blast2go	membrane fraction	GO:0005624	Cellular Component	3.40179e-25	100%
Blast2go	cytosol	GO:0005829	Cellular Component	3.40179e-25	100%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.40179e-25	100%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NKP5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 82 aas, your sequence is shorter than subject: 58 - 202

Fln protein: RKQVVIDGETCLLDILDTAGQEEHSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR*

Protein Length: 59

Fln nts: ACCGGAAGCAGGTGGTCATTGATGGGGAGACGTGCCTGTTGGACATCCTGGATACCGCCGGCCAGGAGGAGCACAGCGCCATGCGGGACCAGTACATGCGCACCGGGGAGGGCTTCCTGTGTGTGTTTGCCATCAACAACACCAAGTCTTTTGAGGACATCCACCAGTACAGGTGAACCCCGTGAGGCTAGCCCGGGAGCCCACGCCGCACAGGTCTACAGTGCT

Fln Alignment:

sp_v1.1_unigene52862___KQVVIDGETCLLDILDTAGQEEHSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY
A9NKP5_______________RTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain