SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene52490

Length: 490 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene52490
CGTCGTGACCTTGGCTGTCACTCAATCTATGGTCACTTGGTGTAATCTTATACGAGCTTTATGTTGGTCGTCGTCCTTTTTCTGTCATTCTGTCTATACGCTTATTCGGCACATTGTTAAGGACCCAGTTAAATATCCAGACAATATCAGCCCTAATTTCAAAAGTTTTTTGAAGGGTCTTTTGAACAAGGTTTCACAGAATAGATTGACTTGGCCTGCACTTTTGGAGCACCCATTTGTACAAGAGAACCAAGCAGAGATAGAAGCTAGAGAAGCACGTGCTGCAACTGCTGCTGCAAGAGGATGTGATGCAGCTTGGAGGGGTGAAGTCAATATTGTGATTCCCTCACCTGCTCGAAACATTGCCAGTGCACATAGCAGTAGTCCCGTAGGAAAGAAGCAGACAGATGATGCTTCTGAAAAAGTCACAGAAACTTCTGCAAATGATCGCCAGCATTAGTTCCACGCCCTTCGCAGTTAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene52490

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative (EC:2.7.11.17); K06228 fused [EC:2.7.11.1]	-	-	9.0e-24	51%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	85%
Blast2go	atp binding	-	-	6.10465e-25	85%

Source	ECs	Term	Type	e value	Identity
AutoFact	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	9.0e-24	51%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytokinesis by cell plate formation	GO:0000911	Biological Process	6.10465e-25	85%
Blast2go	embryo sac cellularization	GO:0009558	Biological Process	6.10465e-25	85%
Blast2go	transferase activity	GO:0016740	Molecular Function	6.10465e-25	85%
Blast2go	phragmoplast	GO:0009524	Cellular Component	6.10465e-25	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase-like domain	IPR011009	-	6.10465e-25	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9S745

Fln msg: Overlapping hits, possible frame ERROR between 80 and 77, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 742 aas, your sequence is shorter than subject: 153 - 1081

Fln protein: S*PWLSLNLWSLGVILYELYVGRRxxxCHSVYTLIRHIVKDPVKYPDNISPNFKSFLKGLLNKVSQNRLTWPALLEHPFVQENQAEIEAREARAATAAARGCDAAWRGEVNIVIPSPARNIASAHSSSPVGKKQTDDASEKVTETSANDRQH*

Protein Length: 154

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTATGGTCACTTGGTGTAATCTTATACGAGCTTTATGTTGGTCGTCGTxxxxxxxxxTGTCATTCTGTCTATACGCTTATTCGGCACATTGTTAAGGACCCAGTTAAATATCCAGACAATATCAGCCCTAATTTCAAAAGTTTTTTGAAGGGTCTTTTGAACAAGGTTTCACAGAATAGATTGACTTGGCCTGCACTTTTGGAGCACCCATTTGTACAAGAGAACCAAGCAGAGATAGAAGCTAGAGAAGCACGTGCTGCAACTGCTGCTGCAAGAGGATGTGATGCAGCTTGGAGGGGTGAAGTCAATATTGTGATTCCCTCACCTGCTCGAAACATTGCCAGTGCACATAGCAGTAGTCCCGTAGGAAAGAAGCAGACAGATGATGCTTCTGAAAAAGTCACAGAAACTTCTGCAAATGATCGCCAGCATTAGTTCCACGCCCTTCGCAGTTAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene52490___GVILYELYVGRRPxFCHSVYTLIRHIVKDPVKYPDNISPNFKSFLKGLLNKVSQNRLTWPALLEHPFVQ
A9S745_______________GVILYELYVGQPPxYTNSVYTLIRHIVKDPVKYPDSISPNFKSFLKGLLNKVSQNRLTWPGLLEHPFVR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain