SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene51781

Length: 344 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene51781
CGTCGTGACCTTGGCTGTCACTCAAGTTTAAGGTGGTTTCGCATTTTGTTTGATGGGCTCGATCCATTTTACAACGAGTTTTTGCTTATCTTTGGCTTGGTTTATGCAGCTTTTTCCATATCATGGATGAACAAGTGATCACACCTGAAGACATGTCTCCATCTTCTTCAAATTCCAGCACCTCTGCTGTTTATTCTCTGGGTCAATCTGTCATCCCTGTGATAAATAAATTGCAAGACATATTCGCACAGCTAGGCAGTGCCTCAACGGTTGACCTGCCCCAAGTTGCAGTTGTAGGCAGTCAGAGTAGTGGTAAATCCAGTGTTCTGGAAGCCCTTGTCGGT

Ace file of the UniGene sp_v1.1_unigene51781

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dynamin, putative	-	-	4.0e-06	55%
FL-Next	Isoform 2 of Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B	-	-	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Dynamin, GTPase domain	IPR001401	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8LFT2-2

Fln msg: Distance to subject end: 305 aas, your sequence is shorter than subject: 74 - 370

Fln protein: MDEQVITPEDMSPSSSNSSTSAVYSLGQSVIPVINKLQDIFAQLGSASTVDLPQVAVVGSQSSGKSSVLEALVG

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTAAGGTGGTTTCGCATTTTGTTTGATGGGCTCGATCCATTTTACAACGAGTTTTTGCTTATCTTTGGCTTGGTTTATGCAGCTTTTTCCATATC_-_ATGGATGAACAAGTGATCACACCTGAAGACATGTCTCCATCTTCTTCAAATTCCAGCACCTCTGCTGTTTATTCTCTGGGTCAATCTGTCATCCCTGTGATAAATAAATTGCAAGACATATTCGCACAGCTAGGCAGTGCCTCAACGGTTGACCTGCCCCAAGTTGCAGTTGTAGGCAGTCAGAGTAGTGGTAAATCCAGTGTTCTGGAAGCCCTTGTCGGT

Fln Alignment:

sp_v1.1_unigene51781___LGQSVIPVINKLQDIFAQLGSASTVDLPXXXXXXXXXXXXXXXLEALVG
Q8LFT2-2_____________LGSSVIPIVNKLQDIFAQLGSQSTIALPQVAVVGSQSSGKSSVLEALVG

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
16		25		75	0.996476
21		75	25		0.996476
23		75	25		0.996476
25	75	25			0.996478
26		25	75		0.996481
29			25	75	0.996478
30	75		25		0.99649
31	75	25			0.99649
32			66	33	0.997452
35		33	66		0.997452
36	33		66		0.997452
37		25		75	0.99649
39		33		66	0.997452
40	33	66			0.997452
123		50		50	1.0
124		50	50		1.0
247		75		25	0.99649

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain