SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene51505

Length: 372 nt

UniGene Fasta

>sp_v1.1_unigene51505
CGTCGTGACCTTGGCTGTCACTCAGTATTTCTACTTTAAACCTCCTCTTGCAGTCTGACGTTAACGGCTTTCCCCCAGTGGATATCGAACAGGAAGACACTGCGACGCTTCTCTACTCGTCGGGGACAACGGGCAAAAGCAAGGGAGTCATTTCCACCCATAGAAATCTCATTGCCATGATATCTGGAGCTCTGAGCAGAGACGATATGAAGGGAGGGAAAATATTTTTATCCATCGTCCCGCTGTTTCATGTTTTTGGGTTTTTCTATACACTTTCTCGCATTGCTATTGTGGGTACCATGGTAGTTATGCGGAAATTCGATTTGGCTGAAATGCTTTTGGCCATACAGAAGTCAGAGTGAATATCCTCCC

Ace file of the UniGene sp_v1.1_unigene51505

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ptr4CL5, ACLL11; 4-coumarate-coa ligase	-	-	2.0e-18	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	acyl:coa ligase	-	-	1.47686e-20	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	1.47686e-20	69%
Blast2go	response to wounding	GO:0009611	Biological Process	1.47686e-20	69%
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.47686e-20	69%
Blast2go	peroxisome	GO:0005777	Cellular Component	1.47686e-20	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP93

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 261 aas, your sequence is shorter than subject: 120 - 548

Fln protein: S*PWLSLSISTLNLLLQSDVNGFPPVDIEQEDTATLLYSSGTTGKSKGVISTHRNLIAMISGALSRDDMKGGKIFLSIVPLFHVFGFFYTLSRIAIVGTMVVMRKFDLAEMLLAIQKSE*

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATTTCTACTTTAAACCTCCTCTTGCAGTCTGACGTTAACGGCTTTCCCCCAGTGGATATCGAACAGGAAGACACTGCGACGCTTCTCTACTCGTCGGGGACAACGGGCAAAAGCAAGGGAGTCATTTCCACCCATAGAAATCTCATTGCCATGATATCTGGAGCTCTGAGCAGAGACGATATGAAGGGAGGGAAAATATTTTTATCCATCGTCCCGCTGTTTCATGTTTTTGGGTTTTTCTATACACTTTCTCGCATTGCTATTGTGGGTACCATGGTAGTTATGCGGAAATTCGATTTGGCTGAAATGCTTTTGGCCATACAGAAGTCAGAGTGAATATCCTCCC

Fln Alignment:

sp_v1.1_unigene51505___DVNGFPPVDIEQEDTATLLYSSGTTGKSKGVISTHRNLIAMISGALSRDDMKGGKIFLSIVPLFHVFGFFYTLSRIAIVGTMVVMRKFDLAEMLLAIQK
B8LP93_______________DLKDMPSIDIKQDDTATLLYSSGTTGKSKGVVSTHGNYIATIAGNRVRYETEGCKMYICSMPLFHIYGLRFLVCTLAAGATIVVPPKFDMEEILRSIER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain