SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene51391

Length: 413 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene51391
TTGTGATGGGAGTAGCCTCTGCCTTATCCTATTTGCACGGGGAATGGGAGCAACAGGTGATTCACAGGGATGTAAAGGCAAGCAATATTTGTTGGACGCAAGTTTCAATGCCAGACTAGGAGACTTTGGGTTGGCACGCCTTATGGATCACAATAGAGTCCAGATGCTACACTTACAGCAGGAACCATGGGATACCTTGCGCCTGAGTATCTTCAAACAGGAAAGGCCTCCATGAAAACTGATGTGTTCAGCTTTGGGGTACTGGCTTTGGAAGTAGCATGTGGGAGAAGAGCCATAGAGAAGGATGTGCCATCAGGTAACAATAATCTTGTTGATTGGGTTTGGAGTTTACATAGCCAAGACAAGCTTTTGGAGGCTGCAGATGCAAGCCTGGAGGGAGAATTTGATTGGGA

Ace file of the UniGene sp_v1.1_unigene51391 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lectin protein kinase, putative	-	-	2.0e-38	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	carbohydrate binding	-	-	5.95131e-41	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	5.95131e-41	76%
Blast2go	transferase activity	GO:0016740	Molecular Function	5.95131e-41	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.95131e-41	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	5.95131e-41	76%
Blast2go	Protein kinase-like domain	IPR011009	-	5.95131e-41	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: Overlapping hits, possible frame ERROR between 89 and 74, and possible frame ERROR between 151 and 157, Distance to subject end: 42 aas, your sequence is shorter than subject: 137 - 636

Test code: 0

Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.

Fln protein: VMGVASALSYLHGEWEQQVIHRDxxxxxxxLDASFNARLGDFGLARLMDxxxSPDATLTAGTMGYLAPEYLQTGKASMKTDVFSFGVLALEVACGRRAIEKDVPSGNNNLVDWVWSLHSQDKLLEAADASLEGEFDW

Protein Length: 138

Fln nts: TTGTGATGGGAGTAGCCTCTGCCTTATCCTATTTGCACGGGGAATGGGAGCAACAGGTGATTCACAGGGATxxxxxxxxxxxxxxxxxxxxxTTGGACGCAAGTTTCAATGCCAGACTAGGAGACTTTGGGTTGGCACGCCTTATGGATCxxxxxxAGAGTCCAGATGCTACACTTACAGCAGGAACCATGGGATACCTTGCGCCTGAGTATCTTCAAACAGGAAAGGCCTCCATGAAAACTGATGTGTTCAGCTTTGGGGTACTGGCTTTGGAAGTAGCATGTGGGAGAAGAGCCATAGAGAAGGATGTGCCATCAGGTAACAATAATCTTGTTGATTGGGTTTGGAGTTTACATAGCCAAGACAAGCTTTTGGAGGCTGCAGATGCAAGCCTGGAGGGAGAATTTGATTGGGA

Fln Alignment:

sp_v1.1_unigene51391___GVASALSYLHGEWEQQVIHRDVxxxxxLLDASFNARLGDFGLARLMDHxxSPDATLTAGTMGYLAPEYLQTGKASMKTDVFSFGVLALEVACGRRAIEKDVPSGNNNLVDWVWSLHSQDKLLEAADASLEGE
A9NVC0_______________GVAAGLLYLHEQWEKRVVHRDIxxxxxLLDSELNGRLGDFGLARLYDHxxNPETTHVVGTLGYIAPELIQTGKATPSSDVFSFGVLLLEVACGRNPVDSLEDSERMILAEWAWELYTEGRLLEASDPKLAGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain