SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene51337

Length: 438 nt

UniGene Fasta

>sp_v1.1_unigene51337
ATGGGCTTGCTGCAGCCAAACTTTTTGAATTGGACCCTGGAAATGCTGCACATTATGTATTACTGTCAAATATGTATGCACTAAGTGGCATGTGGGATGAGAAAGAAAAGCTTCGTGACTTTGGCTGTCATGAGAGTAATTAAGATTCCAGGGCTCAGCTGGATTGAGGTCAACAATAAGGTGCATACTTTCCTGGTCGGAGATCAGCCTGCACATTATTAAACACTAGTGGAGAGGTGGACGGATTGTCAACGCATGTGGAGGCTTGATATGAACGTTGCATACACCTGTACTGACCGGCTTTATGATGTTTGAAAAGNGCATATGCCATAAATGAAATGTTATCTACAACTACAGTCAAAAAGATGGGTATTCAAGTTTATCAACACACCATCGATGCAATCTACATTGACCTGTCAAGAATTTCCCAATCTGCTG

Ace file of the UniGene sp_v1.1_unigene51337

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os09g0327200 protein n=3 Tax=Oryza sativa RepID=Q0J2K9_ORYSJ	-	-	6.0e-11	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]	-	-	4.90391e-11	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Separated hits, possible frame ERROR between 116 and 136, Unexpected STOP codon at 3' end. Distance to subject end: 38 aas, your sequence is shorter than subject: 74 - 246

Fln protein: GLAAAKLFELDPGNAAHYVLLSNMYALSGMWDEKEKLxxxxxxxxVIKIPGLSWIEVNNKVHTFLVGDQPAHY*

Protein Length: 75

Fln nts: ATGGGCTTGCTGCAGCCAAACTTTTTGAATTGGACCCTGGAAATGCTGCACATTATGTATTACTGTCAAATATGTATGCACTAAGTGGCATGTGGGATGAGAAAGAAAAGCTTCGxxxxxxxxxxxxxxxxxxxxxAGTAATTAAGATTCCAGGGCTCAGCTGGATTGAGGTCAACAATAAGGTGCATACTTTCCTGGTCGGAGATCAGCCTGCACATTATTAAACACTAGTGGAGAGGTGGACGGATTGTCAACGCATGTGGAGGCTTGATATGAACGTTGCATACACCTGTACTGACCGGCTTTATGATGTTTGAAAAGaGCATATGCCATAAATGAAATGTTATCTACAACTACAGTCAAAAAGATGGGTATTCAAGTTTATCAACACACCATCGATGCAATCTACATTGACCTGTCAAGAATTTCCCAATCTGCTG

Fln Alignment:

sp_v1.1_unigene51337___AAAKLFELDPGNAAHYVLLSNMYALSGMWDEKEKLRxxxxxxxVIKIPGLSWIEVNNKVHTFLVGDQ
D5AAE0_______________AAECLFQLEPHNAAKYVLLSNIYAAAGRWDDVAKVRxxxxxxxVQKQPGCSWIEVKNKVHTFMVEDK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain