SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene51305

Length: 502 nt

UniGene Fasta

>sp_v1.1_unigene51305
CGTCGTGACCTTGGCTGTCACTCATTTGGGCACTGGGCGAAGGATTGCCCTTTGGTCAGTGTCAGACCCCAGTGTAATGCGGCTCAAAGTGGGGACCCAGGTGCTTATAATATCCCAGAGATACTCTGCCCTTACTGTGGCGGAGTATGCCTGATTATTACCTCGCATACCAAGGAAAATCCTGGCAGAAAATTCTACAAATGCCCTGGTGAGGGAGCTGTTCAATGTAAGTTCTTTCAATGGTGTGTTGAACCAGTCTCTTCTCTCAGACAGAATTCTCCAGGAGGAGGAGAGTTTAGACGGCAGTGTACAACTCCCACACAGATTTCCCCAGTAGCTGCAGGAGGAGGGTTCAGAGGGCAGTCTGCAATTTCCACACAGAGTTCTCCAGTAACAGCAGGAGAGTTTAGAGGGCAGCCTGCAAATTCCACACAGAAATCTCTACCGGGAGGGTTTAGAGGGCAGCGTCCAACTCCCAGCATTAACAGCATTAACAGCAATG

Ace file of the UniGene sp_v1.1_unigene51305

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Emb\|CAB86673.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FFY2_ARATH	-	-	2.0e-11	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	zinc knuckle (cchc-type) family protein	-	-	3.79644e-13	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, GRF-type	IPR010666	-	3.79644e-13	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPJ7

Fln msg: Distance to subject end: 106 aas, your sequence is shorter than subject: 167 - 374

Fln protein: RRDLGCHSFGHWAKDCPLVSVRPQCNAAQSGDPGAYNIPEILCPYCGGVCLIITSHTKENPGRKFYKCPGEGAVQCKFFQWCVEPVSSLRQNSPGGGEFRRQCTTPTQISPVAAGGGFRGQSAISTQSSPVTAGEFRGQPANSTQKSLPGGFRGQRPTPSINSINSN

Protein Length: 168

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGGGCACTGGGCGAAGGATTGCCCTTTGGTCAGTGTCAGACCCCAGTGTAATGCGGCTCAAAGTGGGGACCCAGGTGCTTATAATATCCCAGAGATACTCTGCCCTTACTGTGGCGGAGTATGCCTGATTATTACCTCGCATACCAAGGAAAATCCTGGCAGAAAATTCTACAAATGCCCTGGTGAGGGAGCTGTTCAATGTAAGTTCTTTCAATGGTGTGTTGAACCAGTCTCTTCTCTCAGACAGAATTCTCCAGGAGGAGGAGAGTTTAGACGGCAGTGTACAACTCCCACACAGATTTCCCCAGTAGCTGCAGGAGGAGGGTTCAGAGGGCAGTCTGCAATTTCCACACAGAGTTCTCCAGTAACAGCAGGAGAGTTTAGAGGGCAGCCTGCAAATTCCACACAGAAATCTCTACCGGGAGGGTTTAGAGGGCAGCGTCCAACTCCCAGCATTAACAGCATTAACAGCAATG

Fln Alignment:

sp_v1.1_unigene51305___CHSFGHWAKDCPLVSVRPQCNAAQSGDPGAYNIPEILCPYCGGVCLIITSHTKENPGRKFYKCP-GEGAVQCKFFQWCVEPVSSLRQNSPG--GGEFR------RQCTTPTQISPVAAG
B8LPJ7_______________CQQPGHWAKDC----VASTYAGPNRGDESGPQAPEKQCPCGGGPCLVLMSSTEKNPGRKFYKCPLREDGGRCNFFEWC-----DAAQGSSGAYGGQARAFSADISEGSEPSMQCPCGAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain