SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene51299

Length: 2050 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene51299
CGTCGTGACCTTGGCTGTCACTGGGGTACTAAAAGACACTTTGGAAAATTGATGTGGCTGGAACGATCAGCTAGACCATAGCTGATCGCTGATTTGGTCCTCGTATGCACTTAAAAGCTGGCCTAGAAGGGCATTTGACATAACGTTTAATTATGGTTATTGAAGCTTCACGATTGCAACCGCAGGAAAAGGGAAACAAAGAGTTCTTAGGTACACCTATCGATCTCTGGCTGTCACGCTGTCTTGTGTTGAGGGTAGATTTGCGGGCGCTGGAAAGAAAGGGCAGGGAAGGATTCTTCCTGTCTGCGTCTATACCAAAAATGGCTGCCATTGCGGTCGGCGGTAGGAACCGCAACAATGGACGGAACGCGGATGGTGATGAAAACCTAGTATTTGAAACAAGTCCGGGAGTAGAAGTAATCGCGAGCTTTGATCAGATGGGTATCCGTGACGACCTTCTTCGAGGTATATACCAATATGGCTTCGAGAAACCCTCAGCTATTCAGCAGAGAGCGGTCATGCCCATCATCAACGGCAGAGATGTTATTGCGCAGGCACAGTCTGGGACGGGAAAGACCTCCATGATTGCCCTCGCTGTCTGCCAGATAATTGATACCTCCATCCGAGAGGTTCAAGCTTTAATTGTATCACCTACAAGAGAACTTGCAGCTCAAACAGAGAAAGTGATTCTTGCCATAGGAGATTTCATAAATGTTCAAGCCCATGCATGTATTGGTGGCAAGAGTATTGGAGAGGACATCAGAAAATTGGAATATGGTGTTCATGTGGTATCAGGAACACCAGGAAGAGTATGTGATATGATCAAGCGCAGGACTTTAAGGACTAGAGCTGTAAAACTACTTGTTCTTGATGAATCTGATGAGATGTTGAGCAGGGGATTCAAAGACCAGATATATGATGTTTATCGATACCTTCCACCAGAGCTTCAGGTTGTGCTGATATCAGCAACTTTGCCACATGAGATTTTGGAGATTACAAACAAATTCATGACTGATCCTGTAAGAATCCTTGTCAAACGTGATGAATTGACACTGGAGGGCATCAAACAATTTTTTGTGGCTGTTGAAAGAGAGGAGTGGAAGTTTGACACCCTATGTGATCTATATGATACACTTACTATTACTCAGGCTGTCATATTTTGCAATACCAAAAGAAAGGTTGATTGGTTGACAGAAAAGATGCGAAGCAATAATTTCACTGTGTCTTCTATGCATGGAGACATGCCACAAAAAGAACGTGATGCAATTATGGCAGAATTTCGTGCAGGCACAACCCGTGTTTTAATCACAACAGATGTTTGGGCTCGTGGTCTTGATGTTCAGCAGGTTTCCTTGGTGATAAACTATGATCTTCCCAACAATCGTGAACTTTACATTCATAGAATTGGTCGCTCAGGTCGTTTCGGTCGAAAGGGTGTTGCAATAAATTTTGTTCGAAATGATGATATTAGGATACTAAGAGATATTGAGCAGTATTACAGTACTCAGATAGATGAAATGCCCATGAATGTGGCAGATCTGATCTAAATAATGCAATTATTCCAGCATGTAATATTAGCTACAACAAGTGTCCTGATGCCTGCTTAATTAGGACATGTTAAACATCCCCTGTATTTTCAGTAGCTGTGCTACATTTGCTTCAAAGAATGTTTTGTAGTGGCAAGCAGAGTGTCTCTCGGTGTTGTGCCTGCCAGATGTTGTATACTTCAAATTTCATGTCCAACGTGCTTATAGATTTTATAGTCTGTCCTGTAAGCTTCTGAGTGGAGCAGTTTAATGTTGACAGCACGAAAATGAATTTGCTTGTATTCTTTTATAATATTGACAGTCTGCAAAGTTTGACATCATCGTTAATCAGTTTAAAGGTTTGTGCTTTATTCGTATGATGTGATACATCGACCACATCTTTCCTGAATCCCAGAATAGAGCCTGGTTGTACAAGGGTTATATTAGTATTTATGGTAGCATAGAGGACTTGTTTTAACTGCACATATGTATTAATTATAGGAATCTTTGTAATATATGTGATA

Ace file of the UniGene sp_v1.1_unigene51299

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 2 n=7 Tax=Poaceae RepID=RH2_ORYSJ	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	nicotiana eukaryotic translation initiation factor 4a	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	response to hypoxia	GO:0001666	Biological Process	96%
Blast2go	mRNA processing	GO:0006397	Biological Process	96%
Blast2go	protein binding	GO:0005515	Molecular Function	96%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	96%
Blast2go	exon-exon junction complex	GO:0035145	Cellular Component	96%
Blast2go	nucleolus	GO:0005730	Cellular Component	96%
Blast2go	nuclear speck	GO:0016607	Cellular Component	96%
Blast2go	membrane	GO:0016020	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Blast2go	Helicase, C-terminal	IPR001650	-	96%
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	96%
Blast2go	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	96%
Blast2go	RNA helicase, DEAD-box type, Q motif	IPR014014	-	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUU4

Fln msg: your sequence is longer than subject: 465 - 408

Fln protein: MVIEASRLQPQEKGNKEFLGTPIDLWLSRCLVLRVDLRALERKGREGFFLSASIPKMAAIAVGGRNRNNGRNADGDENLVFETSPGVEVIASFDQMGIRDDLLRGIYQYGFEKPSAIQQRAVMPIINGRDVIAQAQSGTGKTSMIALAVCQIIDTSIREVQALIVSPTRELAAQTEKVILAIGDFINVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAVKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVADLI*

Protein Length: 466

Fln nts: CGTCGTGACCTTGGCTGTCACTGGGGTACTAAAAGACACTTTGGAAAATTGATGTGGCTGGAACGATCAGCTAGACCATAGCTGATCGCTGATTTGGTCCTCGTATGCACTTAAAAGCTGGCCTAGAAGGGCATTTGACATAACGTTTAATT_-_ATGGTTATTGAAGCTTCACGATTGCAACCGCAGGAAAAGGGAAACAAAGAGTTCTTAGGTACACCTATCGATCTCTGGCTGTCACGCTGTCTTGTGTTGAGGGTAGATTTGCGGGCGCTGGAAAGAAAGGGCAGGGAAGGATTCTTCCTGTCTGCGTCTATACCAAAAATGGCTGCCATTGCGGTCGGCGGTAGGAACCGCAACAATGGACGGAACGCGGATGGTGATGAAAACCTAGTATTTGAAACAAGTCCGGGAGTAGAAGTAATCGCGAGCTTTGATCAGATGGGTATCCGTGACGACCTTCTTCGAGGTATATACCAATATGGCTTCGAGAAACCCTCAGCTATTCAGCAGAGAGCGGTCATGCCCATCATCAACGGCAGAGATGTTATTGCGCAGGCACAGTCTGGGACGGGAAAGACCTCCATGATTGCCCTCGCTGTCTGCCAGATAATTGATACCTCCATCCGAGAGGTTCAAGCTTTAATTGTATCACCTACAAGAGAACTTGCAGCTCAAACAGAGAAAGTGATTCTTGCCATAGGAGATTTCATAAATGTTCAAGCCCATGCATGTATTGGTGGCAAGAGTATTGGAGAGGACATCAGAAAATTGGAATATGGTGTTCATGTGGTATCAGGAACACCAGGAAGAGTATGTGATATGATCAAGCGCAGGACTTTAAGGACTAGAGCTGTAAAACTACTTGTTCTTGATGAATCTGATGAGATGTTGAGCAGGGGATTCAAAGACCAGATATATGATGTTTATCGATACCTTCCACCAGAGCTTCAGGTTGTGCTGATATCAGCAACTTTGCCACATGAGATTTTGGAGATTACAAACAAATTCATGACTGATCCTGTAAGAATCCTTGTCAAACGTGATGAATTGACACTGGAGGGCATCAAACAATTTTTTGTGGCTGTTGAAAGAGAGGAGTGGAAGTTTGACACCCTATGTGATCTATATGATACACTTACTATTACTCAGGCTGTCATATTTTGCAATACCAAAAGAAAGGTTGATTGGTTGACAGAAAAGATGCGAAGCAATAATTTCACTGTGTCTTCTATGCATGGAGACATGCCACAAAAAGAACGTGATGCAATTATGGCAGAATTTCGTGCAGGCACAACCCGTGTTTTAATCACAACAGATGTTTGGGCTCGTGGTCTTGATGTTCAGCAGGTTTCCTTGGTGATAAACTATGATCTTCCCAACAATCGTGAACTTTACATTCATAGAATTGGTCGCTCAGGTCGTTTCGGTCGAAAGGGTGTTGCAATAAATTTTGTTCGAAATGATGATATTAGGATACTAAGAGATATTGAGCAGTATTACAGTACTCAGATAGATGAAATGCCCATGAATGTGGCAGATCTGATCTAA___ATAATGCAATTATTCCAGCATGTAATATTAGCTACAACAAGTGTCCTGATGCCTGCTTAATTAGGACATGTTAAACATCCCCTGTATTTTCAGTAGCTGTGCTACATTTGCTTCAAAGAATGTTTTGTAGTGGCAAGCAGAGTGTCTCTCGGTGTTGTGCCTGCCAGATGTTGTATACTTCAAATTTCATGTCCAACGTGCTTATAGATTTTATAGTCTGTCCTGTAAGCTTCTGAGTGGAGCAGTTTAATGTTGACAGCACGAAAATGAATTTGCTTGTATTCTTTTATAATATTGACAGTCTGCAAAGTTTGACATCATCGTTAATCAGTTTAAAGGTTTGTGCTTTATTCGTATGATGTGATACATCGACCACATCTTTCCTGAATCCCAGAATAGAGCCTGGTTGTACAAGGGTTATATTAGTATTTATGGTAGCATAGAGGACTTGTTTTAACTGCACATATGTATTAATTATAGGAATCTTTGTAATATATGTGATA

Fln Alignment:

sp_v1.1_unigene51299___MAAIAVXXXXXXXXXXADGDENLVFETSPGVEVIASFDQMGIRDDLLRGIYQYGFEKPSAIQQRAVMPIINGRDVIAQAQSGTGKTSMIALAVCQIIDTSIREVQALIVSPTRELAAQTEKVILAIGDFINVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAVKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVADLI
A9NUU4_______________MAAMAGGGRNRNNGRNPDGDENLIFETSPGVEVISSFDQMGIRDDLLRGIYQYGFEKPSAIQQRAVMPIINGRDVIAQAQSGTGKTSMIALAVCQIIDTSIREVQALIVSPTRELAAQTEKVILAIGDFINVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAVKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVADLI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
146		66	33		0.997452
218	66		33		0.997452
333	83		16		0.994512
460		10		90	0.90298
1615	95		4		0.997218
1727		93		6	0.999364
1889	20	80			0.995493
1890	20		80		0.995493
1891	33			66	0.997452
1892		33		66	0.997452
1893	66		33		0.997452
1894	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain