SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene51282

Length: 468 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene51282
ATGGGATCGCCGCCACCGAATTTGTCTCGCAACGGGATTTGGCCGCAGAAAGGCTGTTGCGCAATATGCTTGGAGTCGATGAAACCTGGCTGCGGACATGCGATCTTTACAGCAGAATGTTCTCATTCTTTTCATTTTCCGTGCATTGCCTGGAATGTCCGGCACGGAAACTTGATCTGTCCCGTCTGCCGATCCGAATGGAAAGAAGTGCCGTGGCAAGTTCCTGTAAAGGAAAATGAGAATAAGCATATTGATACCGCTTCGACTCCGCCGATGGCTATAAATGGAAACCCACAGAATCGGAGGCAGCACAATATTGTTAGAGAGGAAGAGGCCGCTTCGAGAACCGCAGAAGAAGAGCAGAGAAGATTGGATCCAGTGCTCAGAATGCTAGATGATTCGATCGCGAGTTTGACAATTCATCGTCAAAGCTTTATCCAAGAACCAGCAGTATACGACGACGACGAG

Ace file of the UniGene sp_v1.1_unigene51282

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SVA9_RICCO	-	-	3.0e-23	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	protein binding	-	-	0.0	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	74%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	74%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	74%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PS55

Fln msg: Distance to subject end: 574 aas, your sequence is shorter than subject: 156 - 829

Fln protein: MGSPPPNLSRNGIWPQKGCCAICLESMKPGCGHAIFTAECSHSFHFPCIAWNVRHGNLICPVCRSEWKEVPWQVPVKENENKHIDTASTPPMAINGNPQNRRQHNIVREEEAASRTAEEEQRRLDPVLRMLDDSIASLTIHRQSFIQEPAVYDDDE

Protein Length: 157

Fln nts: ATGGGATCGCCGCCACCGAATTTGTCTCGCAACGGGATTTGGCCGCAGAAAGGCTGTTGCGCAATATGCTTGGAGTCGATGAAACCTGGCTGCGGACATGCGATCTTTACAGCAGAATGTTCTCATTCTTTTCATTTTCCGTGCATTGCCTGGAATGTCCGGCACGGAAACTTGATCTGTCCCGTCTGCCGATCCGAATGGAAAGAAGTGCCGTGGCAAGTTCCTGTAAAGGAAAATGAGAATAAGCATATTGATACCGCTTCGACTCCGCCGATGGCTATAAATGGAAACCCACAGAATCGGAGGCAGCACAATATTGTTAGAGAGGAAGAGGCCGCTTCGAGAACCGCAGAAGAAGAGCAGAGAAGATTGGATCCAGTGCTCAGAATGCTAGATGATTCGATCGCGAGTTTGACAATTCATCGTCAAAGCTTTATCCAAGAACCAGCAGTATACGACGACGACGAG

Fln Alignment:

sp_v1.1_unigene51282___NLSRNGIWPQKGCCAICLESMKPGCGHAIFTAECSHSFHFPCIAWNVRHGNLICPVCRSEWKEVPWQVPVKENENKHIDTASTPPMAINGNPQNRRQHNIVXXXXXXXXXXXXXXXXLDPVLRMLDDSIASLTIHRQSFIQEPAVYDDDE
C0PS55_______________NLIRNGIRTPKGCCAICLETMKPGHGHAIFTAECSHSFHFPCIASNVRHGNLICPVCRAKWKEVPWQVPVVEAENTDIGTTATTPTVRNGNLQIRRRPNNVRDDEAALRTAEEEQRRLDPVLRILDDSIASFRGHRQSCSQEPTVYDDDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain