SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene51217

Length: 436 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene51217
GAGAAAAACGGAGTTGTTGAACGAAAGAATCGATCAATTGAAGAAAATGTAAGAGCCATGTTACATGAAAAATCAATCAATTGAAGAAGGTGTAAGAGCCATGTTACATGATCAAGACTTGCCGAAGTCTCTGCGGGGAGAAGCAACAAAAACTATTGTCTACATTCAAAATATAAGTCCTCACACATCTCTAGACAACGTGATTCCTGAAGAAGCATTCACTAGGAAGAAACCAAGTGTAGACCATCTCCGAATATTTGGTTGTCTTGTCTATATTCACATTCCGAAAGATAAGAGGAAGAAGTTGGATCCTACAAGCATGAAGGGAACATTTGTTGGCTATAGTAACACTTCAAAGGCATATAGGATCTACATAAAGAGAGGACACCAAATAAAAGTAAGCCGATATGTGGTCTTTGATGAAAGTCTTGCATTC

Ace file of the UniGene sp_v1.1_unigene51217

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH	-	-	9.0e-25	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	retroelement pol polyprotein	-	-	9.67784e-25	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribonuclease H-like domain	IPR012337	-	9.67784e-25	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 44 aas, your sequence is shorter than subject: 145 - 407

Fln protein: RKTELLNERIDQLKKM*EPCYMKNQSIEEGVRAMLHDQDLPKSLRGEATKTIVYIQNISPHTSLDNVIPEEAFTRKKPSVDHLRIFGCLVYIHIPKDKRKKLDPTSMKGTFVGYSNTSKAYRIYIKRGHQIKVSRYVVFDESLAF

Protein Length: 146

Fln nts: GAGAAAAACGGAGTTGTTGAACGAAAGAATCGATCAATTGAAGAAAATGTAAGAGCCATGTTACATGAAAAATCAATCAATTGAAGAAGGTGTAAGAGCCATGTTACATGATCAAGACTTGCCGAAGTCTCTGCGGGGAGAAGCAACAAAAACTATTGTCTACATTCAAAATATAAGTCCTCACACATCTCTAGACAACGTGATTCCTGAAGAAGCATTCACTAGGAAGAAACCAAGTGTAGACCATCTCCGAATATTTGGTTGTCTTGTCTATATTCACATTCCGAAAGATAAGAGGAAGAAGTTGGATCCTACAAGCATGAAGGGAACATTTGTTGGCTATAGTAACACTTCAAAGGCATATAGGATCTACATAAAGAGAGGACACCAAATAAAAGTAAGCCGATATGTGGTCTTTGATGAAAGTCTTGCATTC

Fln Alignment:

sp_v1.1_unigene51217___KNQSIEEGVRAMLHDQDLPKSLRGEATKTIVYIQNISPHTSLDNVIPEEAFTRKKPSVDHLRIFGCLVYIHIPKDKRKKLDPTSMKGTFVGYSNTSKAYRIYIKRGHQIKVSRYVVFDE
B8LKX7_______________KNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain