SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene51214

Length: 386 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene51214
ATGGGGATTAATAATCTGTGGATGGGCTGACGCTGCAAATACCGCCGTATATGTACAAAACTGATGCCCTCATCAAGCATTGGGTTCCAAGATTCCTGAAGAAATGTTCACCGGTAAGAAACCTGACATATCTCATTTTAGAATTTTTGGAAGCCCTGTATATTTTCATGTGCCGAAGGAGAAAAGAAATAAATTGGGTGCATTTGGAAAGAAGGGAATTTTCATGGGCTATGGTGAAAATACTAAAGGCTATAGAATCTATGTAGCCGGTCAAAGGGAAGTCGTAATTAGTCATGATGTCACCTTTGACGAAGAAATGGCTCTCAGCAAGGTAAACAATCTTCCGACTTTGAGGAGCTCTCAAGAAGTCGACACCAGGGAACCGA

Ace file of the UniGene sp_v1.1_unigene51214

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH	-	-	1.0e-20	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	copia-type reverse transcriptase-like protein	-	-	5.90108e-22	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 24 aas, your sequence is shorter than subject: 128 - 407

Fln protein: WGLIICGWADAANTAVYVQN*CPHQALGSKIPEEMFTGKKPDISHFRIFGSPVYFHVPKEKRNKLGAFGKKGIFMGYGENTKGYRIYVAGQREVVISHDVTFDEEMALSKVNNLPTLRSSQEVDTREP

Protein Length: 129

Fln nts: ATGGGGATTAATAATCTGTGGATGGGCTGACGCTGCAAATACCGCCGTATATGTACAAAACTGATGCCCTCATCAAGCATTGGGTTCCAAGATTCCTGAAGAAATGTTCACCGGTAAGAAACCTGACATATCTCATTTTAGAATTTTTGGAAGCCCTGTATATTTTCATGTGCCGAAGGAGAAAAGAAATAAATTGGGTGCATTTGGAAAGAAGGGAATTTTCATGGGCTATGGTGAAAATACTAAAGGCTATAGAATCTATGTAGCCGGTCAAAGGGAAGTCGTAATTAGTCATGATGTCACCTTTGACGAAGAAATGGCTCTCAGCAAGGTAAACAATCTTCCGACTTTGAGGAGCTCTCAAGAAGTCGACACCAGGGAACCGA

Fln Alignment:

sp_v1.1_unigene51214___WADAANTAVYVQN*CPHQALGSKIPEEMFTGKKPDISHFRIFGSPVYFHVPKEKRNKLGAFGKKGIFMGYGENTKGYRIYVAGQREVVISHDVTFDE
B8LKX7_______________WAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain