SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene51070

Length: 248 nt

UniGene Fasta

>sp_v1.1_unigene51070
CGTCGTGACCTTAGCTGTCACTCAACTCTTGGGGAGAAGACAACTACATCTTCATCTATTGCTGCAACAACAAGACACCCTCGACATAGACCTGGCTGCACATGCATTGTTTGCATTCAACCTCCTAGTGAAAGGGGCCTAAACATAAGCCTACATGTACCTGTAATGTTTGTACAACTGTGAAACGTAGGTTTAAGACACTTATGATGAGACGCAAAGAGCGTCAATCTGAAATAGAAGCAGAAAAT

Ace file of the UniGene sp_v1.1_unigene51070

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S617_RICCO	-	-	3.0e-20	81%
FL-Next	sp=B3 domain-containing protein Os07g0679700; Oryza sativa subsp. japonica (Rice).	-	-	0.0	86%
Blast2go	protein	-	-	1.63228e-21	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6Z3U3

Fln msg: Overlapping hits, possible frame ERROR between 138 and 132, Distance to subject end: 159 aas, your sequence is shorter than subject: 83 - 949

Fln protein: RRDLSCHSTLGEKTTTSSSIAATTRHPRHRPGCTCIVCIQPPSxxxxKHKPTCTCNVCTTVKRRFKTLMMRRKERQSEIEAEN

Protein Length: 84

Fln nts: CGTCGTGACCTTAGCTGTCACTCAACTCTTGGGGAGAAGACAACTACATCTTCATCTATTGCTGCAACAACAAGACACCCTCGACATAGACCTGGCTGCACATGCATTGTTTGCATTCAACCTCCTAGTxxxxxxxxxxxxAAACATAAGCCTACATGTACCTGTAATGTTTGTACAACTGTGAAACGTAGGTTTAAGACACTTATGATGAGACGCAAAGAGCGTCAATCTGAAATAGAAGCAGAAAAT

Fln Alignment:

sp_v1.1_unigene51070___RHPRHRPGCTCIVCIQPPSExxPKHKPTCTCNVCTTVKRRFKTLMMRRKERQSEIE
Q6Z3U3_______________KHPRHRPGCTCIVCIQPPSGxxPKHNPACTCNVCMTVRRRFKTLMMRKKQRQSERE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain