SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene51001

Length: 323 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene51001
TAAACTACAAGTTAATGAAGAAGAAGGTGAGGCAGTATGCTCAGCAAATTCAAGAAGGAAAAATGGATCGCCGTCAGGTTCTAAAAGAGATGTCAACTATGTTAGATAAGCAGATTGAAAGAACTGTGCTCTTTCTGCTAGAACAGCAAGGATATCTAGCTGGCAGATTAGAAGCCTTAGGAGAAGAGCGGGAAATGCTAATGGAGCATAATGACTTGTCTTCTGTGCATGAACTTCAAGTAGCATACACAGACATTGGACAGGATCTATTGAAACTTCTGTATTTTGTTGAGATAAATGCAACTGGATTGCGGAAGATACTG

Ace file of the UniGene sp_v1.1_unigene51001 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isoform 2 of SPX domain-containing membrane protein Os06g0129400 n=1 Tax=Oryza sativa Japonica Group RepID=Q658H5-2	-	-	3.0e-32	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	spx (syg1 pho81 xpr1) domain-containing	-	-	2.76416e-35	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SPX, N-terminal	IPR004331	-	2.76416e-35	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLM8

Fln msg: Distance to subject end: 574 aas, your sequence is shorter than subject: 107 - 702

Fln protein: NYKLMKKKVRQYAQQIQEGKMDRRQVLKEMSTMLDKQIERTVLFLLEQQGYLAGRLEALGEEREMLMEHNDLSSVHELQVAYTDIGQDLLKLLYFVEINATGLRKIL

Protein Length: 108

Fln nts: TAAACTACAAGTTAATGAAGAAGAAGGTGAGGCAGTATGCTCAGCAAATTCAAGAAGGAAAAATGGATCGCCGTCAGGTTCTAAAAGAGATGTCAACTATGTTAGATAAGCAGATTGAAAGAACTGTGCTCTTTCTGCTAGAACAGCAAGGATATCTAGCTGGCAGATTAGAAGCCTTAGGAGAAGAGCGGGAAATGCTAATGGAGCATAATGACTTGTCTTCTGTGCATGAACTTCAAGTAGCATACACAGACATTGGACAGGATCTATTGAAACTTCTGTATTTTGTTGAGATAAATGCAACTGGATTGCGGAAGATACTG

Fln Alignment:

sp_v1.1_unigene51001___NYKLMKKKVRQYAQQIQEGKMDRRQVLKEMSTMLDKQIERTVLFLLEQQGYLAGRLEALGEEREMLMEHNDLSSVHELQVAYTDIGQDLLKLLYFVEINATGLRKIL
B8LLM8_______________NYKLMKKKVRQYVQQSQEGTQDRRHVLKEFSKMLDHQVEKTVLFFLEQQGHLAGRLRALGEKCEALIQPNDLAEVHALREAYRDLGQDLLKLLNFVEMNAIGVRKIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain