SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene51000

Length: 267 nt

UniGene Fasta

>sp_v1.1_unigene51000
GCCTGCAGAAATTGGTAATCTGGAAAATGTAAAGAATTTGTATTTAACTTCTTGCTCCCTCAGGGGGCCCATTCCCGATGAGATATCTAATATGCTGTCCCTCAGTAAGCTAGACCTTTCCAACAATCCATTACGGTCCCCTATTCCTGAAGCCATTGGAAATCTGAGCAATCTCACTATTTTAAATATGGTGAACTCAGAACTCAATGGAACAATCCCTTCTGAATTGGGCAAATGCAGAAAACTTAGAACTTTGATGCTCTCCTT

Ace file of the UniGene sp_v1.1_unigene51000

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat receptor protein kinase exs precursor, putative (EC:2.7.11.25 3.1.3.16 1.3.1.74)	-	-	2.0e-23	59%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	40%
Blast2go	leucine-rich repeat receptor protein kinase exs	-	-	8.85501e-26	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	microsporogenesis	GO:0009556	Biological Process	8.85501e-26	71%
Blast2go	tapetal cell fate specification	GO:0010234	Biological Process	8.85501e-26	71%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	8.85501e-26	71%
Blast2go	protein binding	GO:0005515	Molecular Function	8.85501e-26	71%
Blast2go	membrane	GO:0016020	Cellular Component	8.85501e-26	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 598 aas, your sequence is shorter than subject: 88 - 1145

Fln protein: PAEIGNLENVKNLYLTSCSLRGPIPDEISNMLSLSKLDLSNNPLRSPIPEAIGNLSNLTILNMVNSELNGTIPSELGKCRKLRTLMLS

Protein Length: 89

Fln nts: GCCTGCAGAAATTGGTAATCTGGAAAATGTAAAGAATTTGTATTTAACTTCTTGCTCCCTCAGGGGGCCCATTCCCGATGAGATATCTAATATGCTGTCCCTCAGTAAGCTAGACCTTTCCAACAATCCATTACGGTCCCCTATTCCTGAAGCCATTGGAAATCTGAGCAATCTCACTATTTTAAATATGGTGAACTCAGAACTCAATGGAACAATCCCTTCTGAATTGGGCAAATGCAGAAAACTTAGAACTTTGATGCTCTCCTT

Fln Alignment:

sp_v1.1_unigene51000___PAEIGNLENVKNLYLTSCSLRGPIPDEISNMLSLSKLDLSNNPLRSPIPEAIGNLSNLTILNMVNSELNGTIPSELGKCRKLRTLML
Q9FEU2_______________PPSLFEIKNLTKLLLLSNELTGALPPEIGNCVALSRLRLGNNRLLNQIPREIGKLENLVFLDLAMNQFSGSIPAEIGGCSQLQMLDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain