SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50958

Length: 567 nt

UniGene Fasta

>sp_v1.1_unigene50958
TACAATGATGGCAGCTTATGCCAAATGCGGGCATGGGCAGGAGGCACTGAAATTGTATTGCCATATGCGGAGAGATGGAATTCAACCGAATGAGTTCACGTTTTCTTGTTTTCTGACAGCATGCACTAACTTGGCAGCCCTGGAACATGGCAAGGAGGTCCACGGGGAATAATTAAAGGTGGGTTTCTGTCTGATGTGTATGTGGGGAATGCCCTGGTGCACCTGTATGTGAAATGTGGGAAAATTGAGGAAGCACGCAAAGTATTTGAGAAAATGCCTCAACGAAATGTCGTGTCTTGGACTGTGTTGATAGGAGGGTATGCGCAGATTGGGGAGCTTGACGAAGCCCAAAAGCTCTTTCAGGATATGCCTGACAGAAACGTGTTTTCGTGGAATGCATTGATCACGGGGTATGCACAGAGCGGGCATGTTGCTGAGGCCTTGAAGCTGTTTTCAACGATGTCTGAAAATTCCTTTTCGGCCAGCTCTCAGGACTTGTATCTGAACAGAATGGATTCCTATTCCCTAACCAGAGAGGCACAAGACTTTCCTATCAGATATGCTCAC

Ace file of the UniGene sp_v1.1_unigene50958

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein, putative	-	-	2.0e-30	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.77458e-36	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast RNA processing	GO:0031425	Biological Process	1.77458e-36	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 323 aas, your sequence is shorter than subject: 189 - 644

Fln protein: TMMAAYAKCGHGQEALKLYCHMRRDGIQPNEFTFSCFLTACTNLAALEHGKEVHGxxxxxxxxSDVYVGNALVHLYVKCGKIEEARKVFEKMPQRNVVSWTVLIGGYAQIGELDEAQKLFQDMPDRNVFSWNALITGYAQSGHVAEALKLFSTMSENSFSASSQDLYLNRMDSYSLTREAQDFPIRYAH

Protein Length: 190

Fln nts: TACAATGATGGCAGCTTATGCCAAATGCGGGCATGGGCAGGAGGCACTGAAATTGTATTGCCATATGCGGAGAGATGGAATTCAACCGAATGAGTTCACGTTTTCTTGTTTTCTGACAGCATGCACTAACTTGGCAGCCCTGGAACATGGCAAGGAGGTCCACGGGxxxxxxxxxxxxxxxxxxxxxxxxTCTGATGTGTATGTGGGGAATGCCCTGGTGCACCTGTATGTGAAATGTGGGAAAATTGAGGAAGCACGCAAAGTATTTGAGAAAATGCCTCAACGAAATGTCGTGTCTTGGACTGTGTTGATAGGAGGGTATGCGCAGATTGGGGAGCTTGACGAAGCCCAAAAGCTCTTTCAGGATATGCCTGACAGAAACGTGTTTTCGTGGAATGCATTGATCACGGGGTATGCACAGAGCGGGCATGTTGCTGAGGCCTTGAAGCTGTTTTCAACGATGTCTGAAAATTCCTTTTCGGCCAGCTCTCAGGACTTGTATCTGAACAGAATGGATTCCTATTCCCTAACCAGAGAGGCACAAGACTTTCCTATCAGATATGCTCAC

Fln Alignment:

sp_v1.1_unigene50958___MMAAYAKCGHGQEALKLYCHMRRDGIQPNEFTFSCFLTACTNLAALEHGKEVHGExxxxxxLSDVYVGNALVHLYVKCGKIEEARKVFEKMPQRNVVSWTVLIGGYAQIGELDEAQKLFQDMPDRNVFSWNALITGYAQSGHVAEALKLFSTMSENS
B8LLJ0_______________LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHxxxxxxESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain