SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50935

Length: 309 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene50935
GCAATCTGGTTCGTCGAGTTCTTCGGAGTACTTGCCAGTGACTGGCTGTCCTTTTCCGCAATCTGTTTCATCGAGTTCTTCGGAGTACTTGACAGTGACAGTGACAAAGCCTCAGAAGGAGCATGATGAGATGGCCACTTCTCTAGTTCCCGGGGGGGACACATATATTACATATCTTATCGTCACTTGCACCAATATCCCTGAATTTGGCAATAAGGAGTTCAAGGTCAGGCGTCGATTTCGTGATGTCGTGACTCTGGCTGATAGGCTTTCCGAGTCGTATCGAGGGTATTTCATCCCTCCTCGCCC

Ace file of the UniGene sp_v1.1_unigene50935

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sorting nexin-4, putative	-	-	3.0e-22	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	protein	-	-	6.25697e-24	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	6.25697e-24	75%
Blast2go	phospholipid binding	GO:0005543	Molecular Function	6.25697e-24	75%
Blast2go	membrane	GO:0016020	Cellular Component	6.25697e-24	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phox homologous domain	IPR001683	-	6.25697e-24	75%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXN5

Fln msg: Distance to subject end: 322 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 102 - 408

Fln protein: QSGSSSSSEYLPVTGCPFPQSVSSSSSEYLTVTVTKPQKEHDEMATSLVPGGDTYITYLIVTCTNIPEFGNKEFKVRRRFRDVVTLADRLSESYRGYFIPPR

Protein Length: 103

Fln nts: GCAATCTGGTTCGTCGAGTTCTTCGGAGTACTTGCCAGTGACTGGCTGTCCTTTTCCGCAATCTGTTTCATCGAGTTCTTCGGAGTACTTGACAGTGACAGTGACAAAGCCTCAGAAGGAGCATGATGAGATGGCCACTTCTCTAGTTCCCGGGGGGGACACATATATTACATATCTTATCGTCACTTGCACCAATATCCCTGAATTTGGCAATAAGGAGTTCAAGGTCAGGCGTCGATTTCGTGATGTCGTGACTCTGGCTGATAGGCTTTCCGAGTCGTATCGAGGGTATTTCATCCCTCCTCGCCC

Fln Alignment:

sp_v1.1_unigene50935___YLTVTVTKPQKEHDEMATSLVPGGDTYITYLIVTCTNIPEFGNKEFKVRRRFRDVVTLADRLSESYRGYFIPP
A9NXN5_______________FLKVSVTDPVKMGN--------GVQAYVSYRVITKTNMPEYRGPEKIVIRRYSDFVWLHERLAERNKGIFIPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain