SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50900

Length: 167 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene50900
CGGCAACCTCCGCCTCCCGGTTCAAGCCATTCTCCTGCCTCAGCCTCCCAAGTCGCTGGGATTACAGGCGTGTGCCACCATGCCCGGCTAATTTGTATTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCCTAACCTCAGGTGATCCACC

Ace file of the UniGene sp_v1.1_unigene50900

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AK7; adenylate kinase 7; K00939 adenylate kinase [EC:2.7.4.3]	-	-	1.0e-13	74%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	70%
Blast2go	mre11 meiotic recombination 11 homolog a ( cerevisiae) isoform cra_b	-	-	4.11603e-15	76%

Source	ECs	Term	Type	e value	Identity
AutoFact	Adenylate kinase.	EC:2.7.4.3	-	1.0e-13	74%

Source	KEGGs	Term	e value	Identity
AutoFact	Purine metabolism	00230	1.0e-13	74%
AutoFact	Metabolic pathways	01100	1.0e-13	74%
AutoFact	Biosynthesis of secondary metabolites	01110	1.0e-13	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of kinase activity	GO:0033674	Biological Process	4.11603e-15	76%
Blast2go	DNA duplex unwinding	GO:0032508	Biological Process	4.11603e-15	76%
Blast2go	positive regulation of protein autophosphorylation	GO:0031954	Biological Process	4.11603e-15	76%
Blast2go	sister chromatid cohesion	GO:0007062	Biological Process	4.11603e-15	76%
Blast2go	negative regulation of DNA endoreduplication	GO:0032876	Biological Process	4.11603e-15	76%
Blast2go	protein C-terminus binding	GO:0008022	Molecular Function	4.11603e-15	76%
Blast2go	DNA binding	GO:0003677	Molecular Function	4.11603e-15	76%
Blast2go	ATP-dependent DNA helicase activity	GO:0004003	Molecular Function	4.11603e-15	76%
Blast2go	chromosome, telomeric region	GO:0000781	Cellular Component	4.11603e-15	76%
Blast2go	nucleolus	GO:0005730	Cellular Component	4.11603e-15	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9NF68

Fln msg: Overlapping hits, possible frame ERROR between 110 and 94, Distance to subject end: 19 aas, your sequence is shorter than subject: 55 - 130

Fln protein: ATSASRFKPFSCLSLPSRWDYRRVPPCPANxxxxxxxGFHHVGQTGLELLTSGDP

Protein Length: 56

Fln nts: CGGCAACCTCCGCCTCCCGGTTCAAGCCATTCTCCTGCCTCAGCCTCCCAAGTCGCTGGGATTACAGGCGTGTGCCACCATGCCCGGCTAATxxxxxxxxxxxxxxxxxxxxxGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCCTAACCTCAGGTGATCCACC

Fln Alignment:

sp_v1.1_unigene50900___FKPFSCLSLPSRWDYRRVPPCPANLxxxxxxGFHHVGQTGLELLTSGDP
B9NF68_______________FKQFSCLSLPSSWDYRHAPPCPDNFxxxxxxGFHHVGQTSLELLTSSDP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain