SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50823

Length: 398 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene50823
AAAAGTCTTGGGTTAATCCATTGTAGAGCCACAATGACTATAGCTGAAGAAAATCCCAGCTGGAAATCAGGGGAGCCAGTTTCAACTCGTTGGGTTGTGAAGGGGTGTATGGTTTTGGGCAGGGGTGCGGTATTTCTATTTCGTTAAAGCACAAAAGCAATGTATATGTTTCTCTTTTGCAGGGATGCAATAACCTTACATTCCTAAAGCAAGTCCATGCACAGATATGCTCAATTGGATTAGAACAAGACAGTTTCTGGGGATCCAAACTGATGAGGATGTATGCTATGTATAGCAATATGGAGTATGCGCACAAAATGTTTGACAGATTGCACAAACCAGATATAAACTCATGGAATCTGATGATTAGAGGGTATGCCAGGAACGAGTTCTCCCAT

Ace file of the UniGene sp_v1.1_unigene50823 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9T6U7_RICCO	-	-	5.0e-10	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	pentatricopeptide repeat-containing protein	-	-	5.63014e-12	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 173 aas, your sequence is shorter than subject: 132 - 644

Fln protein: KSWVNPL*SHNDYS*RKSQLEIRGASFNSLGCEGVYGFGQGCGISISLKHKSNVYVSLLQGCNNLTFLKQVHAQICSIGLEQDSFWGSKLMRMYAMYSNMEYAHKMFDRLHKPDINSWNLMIRGYARNEFSH

Protein Length: 133

Fln nts: AAAAGTCTTGGGTTAATCCATTGTAGAGCCACAATGACTATAGCTGAAGAAAATCCCAGCTGGAAATCAGGGGAGCCAGTTTCAACTCGTTGGGTTGTGAAGGGGTGTATGGTTTTGGGCAGGGGTGCGGTATTTCTATTTCGTTAAAGCACAAAAGCAATGTATATGTTTCTCTTTTGCAGGGATGCAATAACCTTACATTCCTAAAGCAAGTCCATGCACAGATATGCTCAATTGGATTAGAACAAGACAGTTTCTGGGGATCCAAACTGATGAGGATGTATGCTATGTATAGCAATATGGAGTATGCGCACAAAATGTTTGACAGATTGCACAAACCAGATATAAACTCATGGAATCTGATGATTAGAGGGTATGCCAGGAACGAGTTCTCCCAT

Fln Alignment:

sp_v1.1_unigene50823___ISLKHKSNVYVSLLQGCNNLTFLKQ---VHAQICSIGLEQDSFWGSKLMRMYAMYSNMEYAHKMFDRLHKPDINSWNLMIRGYARN
B8LLJ0_______________VDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAIN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain