SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50810

Length: 234 nt

UniGene Fasta

>sp_v1.1_unigene50810
CGTCGTGACCTTGGCTGTCACTCATCTTTCTTTGCTCTGAAATTGGGGGATATCCAGCGCCCACAGAAATTAATGATGTCGCCGAAGAGGCCGAGGGAAACCGCAGAAGGCACTTTGCCAGATGAATTACGGTGCAAACGATCGGACGGGAAGCGATGGCGCTGTTCTCAGCCCCGCCTGGAGGGGAAAAGTTACTGCAATCGTCATTCTGAGAAAATTCAACGGTATACCCAG

Ace file of the UniGene sp_v1.1_unigene50810

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	B160; B160; protein binding / transcription factor/ zinc ion binding	-	-	5.0e-05	61%
FL-Next	tr=JmjC domain containing protein, expressed; Oryza sativa subsp. japonica (Rice).	-	-	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	WRC	IPR014977	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: Q10LJ3

Fln msg: Distance to subject end: 878 aas, your sequence is shorter than subject: 54 - 927

Fln protein: MMSPKRPRETAEGTLPDELRCKRSDGKRWRCSQPRLEGKSYCNRHSEKIQRYTQ

Protein Length: 55

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTTCTTTGCTCTGAAATTGGGGGATATCCAGCGCCCACAGAAATTA_-_ATGATGTCGCCGAAGAGGCCGAGGGAAACCGCAGAAGGCACTTTGCCAGATGAATTACGGTGCAAACGATCGGACGGGAAGCGATGGCGCTGTTCTCAGCCCCGCCTGGAGGGGAAAAGTTACTGCAATCGTCATTCTGAGAAAATTCAACGGTATACCCAG

Fln Alignment:

sp_v1.1_unigene50810___AEGTLPDELRCKRSDGKRWRCSQPRLEGKSYCNRH
Q10LJ3_______________AAAAVPEELRCKRSDGKQWRCSAPSMPDKTVCEKH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain