SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50781

Length: 561 nt

UniGene Fasta

>sp_v1.1_unigene50781
CGTCGTGACCTTGGCTGTCACTCAATTCAGTTCCTTCAGGTTTCTGAAAGGGTGCAAGAGAAATGGGTCTTCCCAACCATTTCAGTTCAGCTGAAATTCAGAGCCTAGGAGCCCTCTGCACAACTTTATTTCCCTCGTTGCCCTTAGCAGCGAGTGGCCTTGTACGTGATGATCAGAGGAGTATCGACGTTTATGAATTCTATCAGGCATCAACCCCAAATTGCTGCAGCTGGTCAAAGGTTGGAGAAACGTTGGAAGAAATTCTCCAACCTGATCAATTGCGCATTATCAAGAAAATACTGTGGATGCTATCCACCCCGGTGGGAACGCTTTTACTTGCAGGCAATCTAGCGCTGGCGAGAGAATTTCCGTTTGTCAAGAGATTTGGAGATTTGAGTTTAGAGGGACGAGAGCAGGTTCTTCAGAGCTGGTCTACAAGTTCCCTTTCAATCTTCAGGGCCATTTTCAAAGCCTTCAAGAACAGCGTTGCGTGGAACCATTTCACCAGGGTAAGATCCCGGATTCTTTATATCTCGCATATCTGGATAAAATTAGCCAAGG

Ace file of the UniGene sp_v1.1_unigene50781

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Blast2go	predicted protein [Physcomitrella patens subsp. patens]	-	-	8.29262e-14	55%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ84

Fln msg: Distance to subject end: 564 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 166 - 743

Fln protein: MGLPNHFSSAEIQSLGALCTTLFPSLPLAASGLVRDDQRSIDVYEFYQASTPNCCSWSKVGETLEEILQPDQLRIIKKILWMLSTPVGTLLLAGNLALAREFPFVKRFGDLSLEGREQVLQSWSTSSLSIFRAIFKAFKNSVAWNHFTRVRSRILYISHIWIKLAK

Protein Length: 167

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCAGTTCCTTCAGGTTTCTGAAAGGGTGCAAGAGAA_-_ATGGGTCTTCCCAACCATTTCAGTTCAGCTGAAATTCAGAGCCTAGGAGCCCTCTGCACAACTTTATTTCCCTCGTTGCCCTTAGCAGCGAGTGGCCTTGTACGTGATGATCAGAGGAGTATCGACGTTTATGAATTCTATCAGGCATCAACCCCAAATTGCTGCAGCTGGTCAAAGGTTGGAGAAACGTTGGAAGAAATTCTCCAACCTGATCAATTGCGCATTATCAAGAAAATACTGTGGATGCTATCCACCCCGGTGGGAACGCTTTTACTTGCAGGCAATCTAGCGCTGGCGAGAGAATTTCCGTTTGTCAAGAGATTTGGAGATTTGAGTTTAGAGGGACGAGAGCAGGTTCTTCAGAGCTGGTCTACAAGTTCCCTTTCAATCTTCAGGGCCATTTTCAAAGCCTTCAAGAACAGCGTTGCGTGGAACCATTTCACCAGGGTAAGATCCCGGATTCTTTATATCTCGCATATCTGGATAAAATTAGCCAAGG

Fln Alignment:

sp_v1.1_unigene50781___KGAREMGLPNHFSSAEIQSLGALCTTLFPSLPLAASGLVRDDQRSIDVYEFYQASTPNCCSWSKVGETLEEILQPDQLRIIKKILWMLSTPVGTXXXXXXXXXXREFPFVKRFGDLSLEGREQVLQSWSTS-SLSIFRAIFKAFKNSVAWNHFT
B8LQ84_______________RGGRRTSHSHGLSASQIKSLAAICDAFIPSIPPT------NDLQDPEVESFYRLSGSQNGIPEQVAELIARRVKPIAFLMARWLLWLLSTRLGTWLLCGSASLKKEFPYLQPFSDVQQVSREQILLDWSRGRRITFLKFAFKLFKICCLFTFYT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain