SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50701

Length: 415 nt

UniGene Fasta

>sp_v1.1_unigene50701
ATGGGGAGAATTATATCTGTTGAGTGAATATTTTCTCAGCGCCAAACGGATCTGTAAGCAGGCGACGACTATGGCTGAAGAGCAAGTAAAATAAAGATGTTGGGTGTTTCAACGGTGGTGCCGGCCATCCCCACTGAGAAGCATACCATGTTTCTCTCCAGCCTCGATTTGTTTTGGATTCCCGTTATTAACTCTCATTCCCTTCTGTTCTATAAATTAAGTCCAGGAATGGAGTTTAGTACTGTCACGGATATGCTCAAGAGGAGCCTCTCGTTAGTTCTGGTTGACTTTTATCCAATTGCCGGTCGGTTGAGCAACAAGTGTTCGGGAGAAACGAGTCGACCTGAAATTGACTGTAACGATTGCGGTGTGGAATTCGTGGAAGCATCGATCGATGTGCCTTTCGAGGACCTGG

Ace file of the UniGene sp_v1.1_unigene50701

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transferase domain containing protein	-	-	3.0e-22	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	unknown [Picea sitchensis]	-	-	1.4013e-44	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transferase	IPR003480	-	1.4013e-44	71%
Blast2go	Chloramphenicol acetyltransferase-like domain	IPR023213	-	1.4013e-44	71%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ10

Fln msg: Distance to subject end: 363 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 106 - 497

Fln protein: MLGVSTVVPAIPTEKHTMFLSSLDLFWIPVINSHSLLFYKLSPGMEFSTVTDMLKRSLSLVLVDFYPIAGRLSNKCSGETSRPEIDCNDCGVEFVEASIDVPFEDL

Protein Length: 107

Fln nts: ATGGGGAGAATTATATCTGTTGAGTGAATATTTTCTCAGCGCCAAACGGATCTGTAAGCAGGCGACGACTATGGCTGAAGAGCAAGTAAAATAAAG_-_ATGTTGGGTGTTTCAACGGTGGTGCCGGCCATCCCCACTGAGAAGCATACCATGTTTCTCTCCAGCCTCGATTTGTTTTGGATTCCCGTTATTAACTCTCATTCCCTTCTGTTCTATAAATTAAGTCCAGGAATGGAGTTTAGTACTGTCACGGATATGCTCAAGAGGAGCCTCTCGTTAGTTCTGGTTGACTTTTATCCAATTGCCGGTCGGTTGAGCAACAAGTGTTCGGGAGAAACGAGTCGACCTGAAATTGACTGTAACGATTGCGGTGTGGAATTCGTGGAAGCATCGATCGATGTGCCTTTCGAGGACCTGG

Fln Alignment:

sp_v1.1_unigene50701___KIKMLGVSTVVPAIPTEKHTMFLSSLDLFWIPVINSHSLLFYKLSPGMEFSTVTDMLKRSLSLVLVDFYPIAGRLSNKCSGETSRPEIDCNDCGVEFVEASIDVPFEDL
B8LQ10_______________KVKMLCTSTVVPAVPTVKRSMFLSNLDLIWIPIANSHSVLFYKTNPEMEFTTVTDMLKRSLSSVLVDFYPVAGRLSTKASGETGRPEIDCNDGGVEFVEASIDMDIEDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain