SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50581

Length: 458 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene50581
AGGCGATCGATCCTTCTCTGCGCGAAGGCATGCATCTGGTCGATTGGGTACGTGAAACTCTCGAGAAGAAAAAAGATTCAGTAGAAGTGTTGGATCCTCGACTTCAAGGGCGAACCGATCAACAGATTCAAGAGATGTTACAGGCGCTGGGAGTAGCTCTCCTGTGCGTCAACCCCAATCCAGAAGAACGACCAACCATGAAGGACGTCGCCGCATTGCTCAAGGAAATCAAACACGAATGCGATCAGGACTCCGCCGATTCCAAGGTCGAGCTCCTCATCAAGCATTCTCCCGCCGACTCCAAACGTTGTAACACCGTTGCCACCGAGGTGGCGGAGCACGACGAAGAAGCGCCGCCCTACTCTGGTTCCAAAATCTCGGACCCCCTCATGATGAGATCCTCCCACATGCTCAACTCCTCCACAACCTCCATCCGGCAATATGGAAATTGAAATTCG

Ace file of the UniGene sp_v1.1_unigene50581 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase n=1 Tax=Pinus sylvestris RepID=Q9FEU2_PINSY	-	-	8.0e-29	63%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	63%
Blast2go	protein	-	-	1.44482e-28	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.44482e-28	72%
Blast2go	cell part	GO:0044464	Cellular Component	1.44482e-28	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: your sequence is shorter than subject: 150 - 1145

Fln protein: AIDPSLREGMHLVDWVRETLEKKKDSVEVLDPRLQGRTDQQIQEMLQALGVALLCVNPNPEERPTMKDVAALLKEIKHECDQDSADSKVELLIKHSPADSKRCNTVATEVAEHDEEAPPYSGSKISDPLMMRSSHMLNSSTTSIRQYGN*

Protein Length: 151

Fln nts: AGGCGATCGATCCTTCTCTGCGCGAAGGCATGCATCTGGTCGATTGGGTACGTGAAACTCTCGAGAAGAAAAAAGATTCAGTAGAAGTGTTGGATCCTCGACTTCAAGGGCGAACCGATCAACAGATTCAAGAGATGTTACAGGCGCTGGGAGTAGCTCTCCTGTGCGTCAACCCCAATCCAGAAGAACGACCAACCATGAAGGACGTCGCCGCATTGCTCAAGGAAATCAAACACGAATGCGATCAGGACTCCGCCGATTCCAAGGTCGAGCTCCTCATCAAGCATTCTCCCGCCGACTCCAAACGTTGTAACACCGTTGCCACCGAGGTGGCGGAGCACGACGAAGAAGCGCCGCCCTACTCTGGTTCCAAAATCTCGGACCCCCTCATGATGAGATCCTCCCACATGCTCAACTCCTCCACAACCTCCATCCGGCAATATGGAAATTGA___AATTCG

Fln Alignment:

sp_v1.1_unigene50581___IDPSLREGMHLVDWVRETLEKKK--DSVEVLDPRLQGRTDQQIQEMLQALGVALLCVNPNPEERPTMKDVAALLKEIKHECDQDSADSKVELLIKHSPA
Q9FEU2_______________IDPTIPEGVHLVEWARDAVQSNKLADSAEVIDPRLQGRPDTQIQEMLQVLGVAFLCVNSNPDERPTMKDVAALLKEIRHDC--HDYNGKADLLLKQTPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain